McClintock specifications


Unique identifier OMICS_14560
Name McClintock
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference genome, a consensus set of TE sequences and a paired end sequencing read.
Input format FASTA, FASTQC
Output format BED
Operating system Unix/Linux, Mac OS
Programming languages Java, Perl
Computer skills Advanced
Stability Stable
Requirements FASTQC, RepeatMasker, R, BWA, BioPerl, SAMtools, Blat, Bowtie, BEDTools, twoBitToFa, BCFTools, Exonerate
Maintained Yes



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  • person_outline Casey Bergman <>

Publication for McClintock

McClintock institution(s)
Faculty of Life Sciences, University of Manchester, Manchester, UK; Centro de Biotecnologia e Química Fina (CBQF), Universidade Católica Portuguesa, Porto, PT; Department of Genetics and Institute of Bioinformatics, University of Georgia, Athens, GA, USA
McClintock funding source(s)
This work was supported by Wellcome Trust Award 096602/B/11/Z.

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