mCluster statistics

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Associated diseases

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mCluster specifications

Information


Unique identifier OMICS_05374
Name mCluster
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline mCluster <>

Publication for mCluster

mCluster in publications

 (9)
PMCID: 5492762
PMID: 28587085
DOI: 10.3390/s17061206

[…] (12)rl∝kγtl+γ0, where kγ describes the increase of the decay constant with delay., the mean energy of the l-th cluster follows in general an exponential decay: (13)10log(ωl)=10log(exp(−tl/γ))+mcluster, where mcluster is a normally-distributed variable with standard deviation σcluster around it., for the simplicity of the analysis, we use the modified multi-path channels according to (); […]

PMCID: 4628670
PMID: 26557648
DOI: 10.1155/2015/197895

[…] shaped by the sequence reads. however, it often gives inaccurate number of species for the relatively large number of species in the dataset from the performance comparison to the binning tool mcluster []., on the other hand, a cellular automaton (ca) is a discrete computational model studied for the complex systems in mathematics, computer science, economics, biology, and so forth. […]

PMCID: 4466581
PMID: 26073592
DOI: 10.1038/srep10641

[…] canpredict was used to predict whether a non-synonymous variation would be deleterious to the structure and function of ephb4 using biochemical, evolutionary, and domain-function constraints. mcluster was used to consolidate and visualize analogous sites of ephb4 mutations within other tkd-containing proteins and determine whether mutations have been detected at these sites. pymol […]

PMCID: 4402587
PMID: 25859745
DOI: 10.1186/1471-2105-16-S5-S2

[…] reads into different species or taxonomical classes is a vital step for metagenomic analysis, which is referred to as binning of metagenomic data., in this paper, we propose a new method tm-mcluster for binning metagenomic reads. first, we represent each metagenomic read as a set of "k-mers" with their frequencies occurring in the read. then, we employ a probabilistic topic model -- […]

PMCID: 4535974
PMID: 26484129
DOI: 10.1016/j.gdata.2014.09.014

[…] transformation of mas5 values, median centering of arrays, magnitude normalization of arrays., these three steps correspond to the following commands:cluster.com filename -lcluster.com filename -ca mcluster.com filename -na, cluster.com filename -l, cluster.com filename -ca m, cluster.com filename -na, in step 3 of these procedures (magnitude normalization) the expression values of all (22,283) […]


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mCluster institution(s)
Department of Bioinformatics, Genentech Inc., South San Francisco, CA, USA; Department of Biostatistics, Genentech Inc., South San Francisco, CA, USA

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