MCSC specifications

Information


Unique identifier OMICS_14439
Name MCSC
Alternative name Model-based Categorical Sequence Clustering
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data The n clusters, tab with statistic on all clusters, plot of the clustering, decontaminated fasta file
Output format FASTA, TSV, JPEG
Operating system Unix/Linux
Programming languages Perl, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements
DIAMOND blast, Uniref90 database, Uniref100 taxlist
Maintained Yes

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Documentation


Maintainer


  • person_outline Benjamin Mimee <>

Publication for Model-based Categorical Sequence Clustering

MCSC institution(s)
Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu, QC, Canada; Département de biologie, Université de Sherbrooke, Sherbrooke, QC, Canada; Département d’informatique, Université de Sherbrooke, Sherbrooke, QC, Canada
MCSC funding source(s)
This work was supported by Agriculture and Agri-Food Canada (AAFC) and the United States Department of Agriculture (USDA).

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