mcxarray specifications

Information


Unique identifier OMICS_24625
Name mcxarray
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Stijn van Dongen <>

mcxarray in publications

 (2)
PMCID: 4804564
PMID: 27007663
DOI: 10.1186/s13073-016-0285-0

[…] depths. we then converted the mapped reads into bigwig files., we constructed the co-expression networks for lncrnas and all protein-coding genes from refseq (version of 10 feb 2014) using the mcxarray program in the markov clustering (mcl)-edge network analysis tool [] (http://micans.org/mcl/) with spearman correlation. gene expression was calculated using cuffdiff (see the previous […]

PMCID: 4753501
PMID: 26875827
DOI: 10.1038/srep21593

[…] genes and each column represented gene expression in different tissues or perturbations. pearson correlations were calculated in parallel between all pairs of gene expression vectors with the use of mcxarray on the eos cluster in the oak ridge leadership computing facility (https://www.olcf.ornl.gov/). a threshold greater than or equal to 0.95 was applied to the resulting correlations […]


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