MD-SeeGH specifications

Information


Unique identifier OMICS_02577
Name MD-SeeGH
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MD-SeeGH

MD-SeeGH in publications

 (2)
PMCID: 4070589
PMID: 24686850
DOI: 10.1038/ng.2935

[…] to cgh microarray for 24h-40h. washing, scanning and data extraction were performed according to standard protocols. array cgh data were analyzed using genomic workbench (agilent), brb-cgh tools and md-seegh (see url). mean log2 tumor/reference ratio of all probes in a chromosome region > 1.0 was determined as high-amplitude amplification, and < -1.0 as high-amplitude deletion. […]

PMCID: 3533962
PMID: 23158542
DOI: 10.1186/1755-8794-5-52

[…] expression omnibus (geo) http://www.ncbi.nlm.nih.gov/geo/[], accession number gse34472., microarray data were analyzed using agilent genomic workbench (agilent technologies, santa clara, ca) and md-seegh (http://www.flintbox.ca). the aberration detection method 2 algorithm with threshold at 6 (agilent genomic workbench) was applied to identify common genomic aberrations. mean log2ratio […]


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MD-SeeGH institution(s)
Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada

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