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Citations per year

Number of citations per year for the bioinformatics software tool MD-SeeGH

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MD-SeeGH specifications


Unique identifier OMICS_02577
Name MD-SeeGH
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for MD-SeeGH

MD-SeeGH citations


Genomic and molecular characterization of esophageal squamous cell carcinoma

Nat Genet
PMCID: 4070589
PMID: 24686850
DOI: 10.1038/ng.2935

[…] to CGH microarray for 24h-40h. Washing, scanning and data extraction were performed according to standard protocols. Array CGH data were analyzed using Genomic Workbench (Agilent), BRB-CGH tools and MD-SeeGH (See URL). Mean log2 tumor/reference ratio of all probes in a chromosome region > 1.0 was determined as high-amplitude amplification, and < -1.0 as high-amplitude deletion. These values were […]


Genomic profiling of rectal adenoma and carcinoma by array based comparative genomic hybridization

BMC Med Genomics
PMCID: 3533962
PMID: 23158542
DOI: 10.1186/1755-8794-5-52

[…] Microarray data were analyzed using Agilent Genomic Workbench (Agilent Technologies, Santa Clara, CA) and MD-SeeGH ( The Aberration Detection Method 2 algorithm with threshold at 6 (Agilent Genomic Workbench) was applied to identify common genomic aberrations. Mean Log2ratio of all […]

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MD-SeeGH institution(s)
Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada

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