MD-SeeGH statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool MD-SeeGH
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left CNV detection aCGH data visualization chevron_right
Want to access the full stats & trends on this tool?

MD-SeeGH specifications

Information


Unique identifier OMICS_02577
Name MD-SeeGH
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for MD-SeeGH

MD-SeeGH citations

 (2)
library_books

Genomic and molecular characterization of esophageal squamous cell carcinoma

2014
Nat Genet
PMCID: 4070589
PMID: 24686850
DOI: 10.1038/ng.2935

[…] to CGH microarray for 24h-40h. Washing, scanning and data extraction were performed according to standard protocols. Array CGH data were analyzed using Genomic Workbench (Agilent), BRB-CGH tools and MD-SeeGH (See URL). Mean log2 tumor/reference ratio of all probes in a chromosome region > 1.0 was determined as high-amplitude amplification, and < -1.0 as high-amplitude deletion. These values were […]

library_books

Genomic profiling of rectal adenoma and carcinoma by array based comparative genomic hybridization

2012
BMC Med Genomics
PMCID: 3533962
PMID: 23158542
DOI: 10.1186/1755-8794-5-52

[…] Microarray data were analyzed using Agilent Genomic Workbench (Agilent Technologies, Santa Clara, CA) and MD-SeeGH (http://www.flintbox.ca). The Aberration Detection Method 2 algorithm with threshold at 6 (Agilent Genomic Workbench) was applied to identify common genomic aberrations. Mean Log2ratio of all […]


Want to access the full list of citations?
MD-SeeGH institution(s)
Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada

MD-SeeGH reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MD-SeeGH