ME-Class specifications

Information


Unique identifier OMICS_29615
Name ME-Class
Alternative names Methylation-based gene Expression Classification, ME-Class2
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
sklearn, numpy, scipy, seaborn, matplotlib, pandas
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline John Edwards

Publications for Methylation-based gene Expression Classification

ME-Class citation

library_books

Modeling complex patterns of differential DNA methylation that associate with gene expression changes

2017
Nucleic Acids Res
PMCID: 5435975
PMID: 28168293
DOI: 10.1093/nar/gkx078

[…] To evaluate the amount of data needed to train ME-Class, we divided the 17 REP datasets into eight samples that were held out for evaluation and nine samples that were used for training. For a given number of training samples (n), nine random perm […]

ME-Class institution(s)
Center for Pharmacogenomics, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, USA
ME-Class funding source(s)
Supported by National Institutes of Health [grant number R01 GM108811]and the National Institutes of Health Genome Analysis Training Program [ grant number T32 HG000045].

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