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MeaBench specifications

Information


Unique identifier OMICS_22369
Name MeaBench
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Stability No
Maintained No

Subtools


  • 60hz
  • Flexraster
  • Neurosock
  • Nssrv
  • Rawsrv
  • Record
  • Replay
  • Salpa
  • Scope
  • Spikedet
  • Spikesound

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Publication for MeaBench

MeaBench in publications

 (17)
PMCID: 5430511
PMID: 28428560
DOI: 10.1038/s41598-017-00981-4

[…] on-chip, and sent to a field-programmable gate array (fpga) board. the data were then streamed to a linux-based host pc for data storage and real-time visualization with an adapted version of the meabench software. matlab (the mathworks) was used for data analysis and visualization during the experiments, as well as for controlling and sending commands to the chip (i.e., for electrode […]

PMCID: 5118563
PMID: 27920665
DOI: 10.3389/fnins.2016.00537

[…] acid, 0.3 mm lead acetate, and hydrochloric acid with an adjustment of the solution ph to 1 (bakkum et al., )., to perform electrophysiology recordings, a custom-made software, adapted from meabench (wagenaar et al., ; bakkum et al., ), was installed on a desktop computer. a field-programmable gate array (fpga) and a microcontroller, embedded in a custom circuit board, were used […]

PMCID: 5091833
PMID: 27806074
DOI: 10.1371/journal.pone.0165600

[…] conducted computationally expensive neural data analysis., one part constituted the main pc software. we modified a toolbox written by daniel wagenaar (http://www.danielwagenaar.net/res/software/meabench/) and let it run on the directly linked workstation in a linux operating system. this modified software, which included all the functions of the toolbox, also had new functions controlling […]

PMCID: 4979901
PMID: 27509295
DOI: 10.1371/journal.pcbi.1005054

[…] larger electrode served as reference. the primary signal was amplified (gain 1100, 1–3500 hz) and sampled at 25 khz/12 bit (mea 1060-bc; multi channel systems). online spike detection was done with meabench (version 1.1.4) [] at six to eightfold root mean square noise level for spike threshold., such networks of dissociated neurons in vitro exhibit spontaneous activity characterized […]

PMCID: 4840215
PMID: 27147977
DOI: 10.3389/fncir.2016.00032

[…] inc gain 1200×, sampling rate 25 khz, bandwidth 1 hz–10 khz). raw electrophysiological signals were filtered (300 hz–3 khz) and putative action potentials (spikes) were detected online using meabench (wagenaar et al., ) as positive or negative excursions beyond 5.0× estimated root-mean-square (rms) noise gathered for each electrode during the first 15 s of each recording. electrodes […]


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MeaBench institution(s)
Caltech, Department of Physics, Caltech, Pasadena, CA, USA; University of Florida, Department of BME, Gainesville, FL, USA; Georgia Tech, Department of BME, Atlanta, GA, USA
MeaBench funding source(s)
Partially supported by grants NS044134 and NS38628 from NIH-NINDS, and EB000786 from NIH-NIBIB, and by the BurroughsWellcome Fund and the Whitaker Foundation.

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