MSGIP specifications
- Unique identifier:
- OMICS_12148
- Software type:
- Package/Module
- Restrictions to use:
- None
- Input format:
- FASTA
- Programming languages:
- Java
- Version:
- 1.0
- Source code URL:
- https://codeload.github.com/msgip/msgip/zip/master
- Name:
- Mean Shift Genomic Island Preditor
- Interface:
- Command line interface, Graphical user interface
- Input data:
- The complete genomic sequence of the investigated bacteria
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
- Eubacteria
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MSGIP distribution
download
MSGIP support
Documentation
Maintainer
- Thaís G. do Rêgo <>
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Publications
-
(de Brito et al., 2016)
A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm.
PLoS One.
PMID: 26731657 DOI: 10.1371/journal.pone.0146352
Institution(s)
Departamento de Informática, Centro de Informática, Universidade Federal da Paraíba, João Pessoa, Brazil; Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago, Chile; Departamento de Biologia Molecular, Centro de Ciências Exatas e da Natureza, Universidade Federal da Paraíba, João Pessoa, Brazil; Instituto Vandique, João Pessoa, Brazil; Beagle Bioinformatics, Santiago, Chile
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