meaRtools specifications

Information


Unique identifier OMICS_25752
Name meaRtools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format CSV
Output format CSV,PDF
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.0.4
Stability Stable
Requirements
plyr, testthat, lattice, gtools, rmarkdown, knitr, reshape2, tcltk, gridExtra, ggplot2(≥2.2.1), R(≥3.2.2), emdist, Rcpp(≥0.12.11)
Maintained Yes

Versioning


No version available

Documentation


Maintainers


  • person_outline Sahar Gelfman
  • person_outline Stephen Eglen

Additional information


https://redmine.igm.cumc.columbia.edu/projects/mea/wiki/MEA_Analysis_guide https://github.com/igm-team/meaRtools/

Publication for meaRtools

meaRtools institution(s)
Institute for Genomic Medicine, Columbia University Medical Center, New York, NY, USA; Department of Genetics and Development, Columbia University Medical Center, New York, NY, USA; Simcere Diagnostics Co, Ltd, Nanjing, China; Department of Biology, Westmont College, Santa Barbara, CA, USA; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; University Program in Genetics and Genomics, Duke University, Durham, NC, USA; Cambridge Computational Biology Institute, University of Cambridge, Cambridge, UK, Axion BioSystems, Inc., Atlanta, GA, USA; Department of Medicine, Austin Health and Royal Melbourne Hospital, University of Melbourne, Melbourne, VIC, Australia; Department of Biostatistics and Bioinformatics, Duke University, Durham, NC, USA; Department of Neurology, Columbia University, New York, NY, USA
meaRtools funding source(s)
Supported by the NIH training grant T32 GM007367, the Wellcome Trust, WNF, funding from NIH R01 NS091118, MJB and the CURE AHC and a Robbins Family Gift.

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