medInria protocols

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chevron_left Image registration 3D image analysis Tractography Image visualization Image visualization 3D image analysis chevron_right
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medInria specifications

Information


Unique identifier OMICS_20644
Name medInria
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 2.2.3
Stability Stable
Maintained Yes

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http://med.inria.fr/docs/25-doc-introduction

medInria in pipeline

2013
PMCID: 3625902
PMID: 23596381
DOI: 10.3389/fnins.2013.00041

[…] image registration tool (http://www.fmrib.ox.ac.uk/fsl/fnirt/index.html)., 3http://www.fmrib.ox.ac.uk/fsl., 4http://www.nitrc.org/projects/dtitk., 5http://www-sop.inria.fr/asclepios/software/medinria., 6the most recent version of dti-tk uses the ppd reorientation algorithm., 7currently available at www.nitrc.org/projects/dwiregistration/., […]


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medInria in publications

 (36)
PMCID: 5573364
PMID: 28842591
DOI: 10.1038/s41598-017-09705-0

[…] anisotropy, mean diffusivity, trace and the eigenvalues and eigenvector maps were calculated with a homemade software application written in matlab (r2007a); the 3d fiber tract map was created using medinria dti track software, as previously described, . the researchers recording the data were entirely blinded to the experimental groups., changes in axonal sprouting after treatment were assessed […]

PMCID: 5539939
PMID: 29065582
DOI: 10.1155/2017/2634389

[…] in diagnostic radiology and the other is a radiologist who is also licentiate in nuclear medicine. images were analyzed in the coronal plane on the freely available medical imaging platform medinria [], which allows visualization and fusion of both nifti files and dicom files. the observers reviewed the five image set for each patient evaluating the alignment of the major anatomical […]

PMCID: 5353554
PMID: 28300134
DOI: 10.1038/srep44433

[…] mean diffusivity, trace, the eigenvalues and eigenvector maps were calculated with a homemade software application written in matlab (r2007a) and the 3d fiber tract map was created using the medinria dti track software (http://www-sop.inia.fr/asclepios/software/medinria). zoomed lesion site 3-dimensional diffusion tensor images were represented using paraview 4.1.0 software as previously […]

PMCID: 5299209
PMID: 28210541
DOI: 10.1016/j.nicl.2016.12.027

[…] after each of the linear registrations, the diffusion tensors were resampled using the b0 transformation matrices, and rotated according to the underlying anatomy. these steps were achieved using medinria ()., after the surface based registration in , a deformation tensor jjt - where j is the jacobian of the transformation from the registration - was computed at each vertex on the surface. […]

PMCID: 5143343
PMID: 28008304
DOI: 10.3389/fnins.2016.00560

[…] in order to correct for eddy current effects and motion artifacts during acquisition (jenkinson et al., ). diffusion tensor image (dti) estimation and deterministic tractography were performed using medinria (toussaint et al., ). fractional anisotropy (fa) threshold was set to 0.1 to ensure the streamlines reaching the gm-wm interface., a pair of brain regions i and j were considered […]


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