MEDIPS specifications

Information


Unique identifier OMICS_00613
Name MEDIPS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data It starts with the aligned reads (typically bam files) and can be used for any genome of interest.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.32.0
Stability Stable
Requirements
methods, stats, graphics, IRanges, GenomicRanges, Rsamtools, DNAcopy, utils, Biostrings, rtracklayer, BiocStyle, edgeR, BSgenome, BSgenome.Hsapiens.UCSC.hg19, biomaRt, gtools, R(>=3.0), preprocessCore, MEDIPSData
Maintained Yes

Versioning


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Documentation


Publication for MEDIPS

MEDIPS institution(s)
Departments of Vertebrate Genomics and Developmental Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany; Department of Rheumatology and Clinical Immunology, Charité Universitätsmedizin Berlin, Berlin, Germany; Institute of Pathology, Laboratory of Molecular Tumour Pathology, Charité Universitätsmedizin Berlin, Berlin, Germany; Division of Signaling and Gene Expression, La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA
MEDIPS funding source(s)
German Federal Ministry of Education and Research with the grant EPITREAT (No. 0316190A); the Max Planck Society with its International Research School program (IMPRS-CBSC); Feodor Lynen postdoctoral Research Fellowship from the Alexander von Humboldt Foundation

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