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Associated diseases

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Medusa specifications

Information


Unique identifier OMICS_08979
Name Medusa
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 3.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Georgios A. Pavlopoulos <>

Publications for Medusa

Medusa in publications

 (22)
PMCID: 5540468
PMID: 28804499
DOI: 10.1155/2017/1278932

[…] was obvious., to shortly mention representative tools in the field, 2d standalone applications like graphvizdb [], ondex [], proviz [], vizant [], guess [], ucinet [], mapman [], patika [], medusa [], or osprey [] as well as 3d visualization tools such as arena3d [, ] and biolayout express [] already exist. each of them is designed to serve a different purpose. for example, ondex […]

PMCID: 5514036
PMID: 28717149
DOI: 10.1038/s41598-017-05887-9

[…] was adopted to calculate the difference in expression abundance between the two samples for each gene. false discovery rate values less than 0.001 were considered to be significantly different., medusa software was used for data display based on the comparison of the protein-protein interaction data from rice (http://arabidopsisreactome.org/download/all_interactions.html)., […]

PMCID: 5562079
PMID: 28627690
DOI: 10.3892/mmr.2017.6785

[…] included within an abstract. statistical analysis was performed using the same methods described for the nlp analysis of g6pd, and the subsequent network was visualized using the open-source medusa software program version 3.0 (https://sites.google.com/site/medusa3visualization) (). genes were classified according to associated signaling pathways. genes involved in various signaling […]

PMCID: 5377455
PMID: 28367976
DOI: 10.1038/srep45950

[…] the data of these two sets of numbers were searched in the string database, to restore the interaction map of these proteins. a protein–protein interaction network map was then created using the medusa software (https://sites.google.com/site/medusa3visualization)., how to cite this article: yu, e.-m. et al. proteomic signature of muscle fibre hyperplasia in response to faba bean intake […]

PMCID: 5057407
PMID: 27724938
DOI: 10.1186/s13071-016-1830-9

[…] with scores > 50 and p < 0.05., protein interaction networks, built using the online database resource search tool for the retrieval of interacting genes (string) [], were visualized by medusa [], a java application for visualizing and manipulating graphs of interaction. the interactions include direct (physical) and indirect (functional) associations derived from the genomic […]


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Medusa institution(s)
European Molecular Biology Laboratory Heidelberg, Germany; Max Delbrück Center for Molecular Medicine Berlin-Buch, Germany

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