Megraft specifications


Unique identifier OMICS_02161
Name Megraft
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for Megraft

Megraft citation


Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

Front Microbiol
PMCID: 4251439
PMID: 25520706
DOI: 10.3389/fmicb.2014.00648

[…] rRNA (SSU) sequences (default options). Read pairs identified as bacterial SSUs by Metaxa were assigned to and grafted on their closest matching bacterial rRNA sequences in SILVA (release 108) using Megraft (version 1.0.2; Bengtsson et al., ), clustered in Usearch (Edgar, ; options “–usersort –id 0.97”), and further subjected to rarefaction analysis in the R package Vegan (Oksanen et al., ). […]

Megraft institution(s)
Institute of Neuroscience and Physiology, The Sahlgrenska Academy, University of Gothenburg, Göteborg, Sweden

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