MemBrain specifications

Information


Unique identifier OMICS_05165
Name MemBrain
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen <>

Additional information


http://www.csbio.sjtu.edu.cn/bioinf/MemBrain/Readme.htm

Publications for MemBrain

MemBrain in publications

 (21)
PMCID: 5872198
PMID: 29518942
DOI: 10.3390/membranes8010016

[…] ene2014-57651-r) and helmholtz-zentrum geesthacht (hzg) through the technology transfer project program and by the helmholtz association of german research centers through the helmholtz portfolio membrain. the authors thank m. schieda and p. merten for the support in the coating process and viscosity determination, and the microscopy service at universitat politècnica de valència (upv) […]

PMCID: 5758597
PMID: 29354051
DOI: 10.3389/fnagi.2017.00428

[…] for cochlear whole mounts in some animals., for whole mount preparation the bone of the cochlear wall and tectorial membrane were removed gradually from the cochlear apex to the base and basilar membrain together with organ of corti was microdissected into four pieces per each cochlea. cochlear whole mounts then were stained with anti-c-terminal binding protein 2 antibodies (anti-ctbp2, […]

PMCID: 5725453
PMID: 29230036
DOI: 10.1038/s41598-017-17621-6

[…] a biomimetic recombinant 3a viral protein. the 3a protein is myristoylated at the n-terminal glycine residue and also contains a hydrophobic region that every algorithm tested (cctop, hmmtop, membrain, memsat, octopus, philius, phobius, pro, prodiv, scampi, scampimsa, and tmhmm) predicts as a transmembrane helix that could anchor 3a protein in the lipid bilayer (fig.  upper panel). […]

PMCID: 5713875
PMID: 29199978
DOI: 10.1107/S2059798317016436

[…] metapsicov is one such meta-predictor that uses a neural network to combine predictions from, amongst others, the psicov, mfdca and ccmpred scores (jones et al., 2015). a related approach is membrain, which is a contact predictor optimized for transmembrane proteins (jones et al., 2015; xiao & shen, 2015). membrain uses a neural network to combine a covariance-based approach (psicov) […]

PMCID: 5536080
PMID: 28737695
DOI: 10.3390/ijms18071593

[…] known as the membrane peroxisomal targeting signal (mpts) and helices found in the nbd. memsat [], used in the cctop and psipred servers, as well as minnou [], were able to predict 5 to 6 tmhs. membrain [], a tool with improved ability in correctly identifying the ends of tmhs and which is also used in the cctop server, detected six to seven tmhs. while a consensus emerged for the positions […]


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MemBrain institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China
MemBrain funding source(s)
Supported by the National Natural Science Foundation of China (No. 61671288, 91530321, 61603161), and Science and Technology Commission of Shanghai Municipality (No. 16JC1404300, 17JC1403500).

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