MEME-ChIP pipeline

MEME-ChIP specifications

Information


Unique identifier OMICS_08098
Name MEME-ChIP
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Timothy L Bailey <>

Publications for MEME-ChIP

MEME-ChIP citation

2015
PMCID: 4515314

[…] variants. this locus has been annotated as an enhancer based on encode histone modification data [45] and linked with the expression of nearby genes (slc11a1, usp37, pnkd, and znf142) [46]. we used meme-chip [47] to identify a creb1 binding motif from the 10,000 strongest chip-seq peaks and searched for the presence of this motif at rs2382818 using fimo (eā€‰<ā€‰1.0x10āˆ’5) [48], […]

MEME-ChIP institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; Department of Genome Sciences, University of Washington, Seattle, WA, USA; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA; Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia

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