MEME-ChIP specifications

Information


Unique identifier OMICS_08098
Name MEME-ChIP
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Timothy L Bailey <>

MEME-ChIP articles

MEME-ChIP citations

 (2)
2016
PMCID: 5192221

[…] peaks for both conditions, although any peaks called in intron areas were then subsequently removed, as these are most likely errors arising from an incorrect peak shift., motif finding. we used the meme-chip programme for motif finding. as input for meme-chip we used a region of 250 bp flanking each peak summit, for a total of 501 bp long sequences extracted from both odd and even peak lists. […]

2016
PMCID: 5175363

[…] was performed by great version 3.0.0 (66) with default parameters., for this analysis, we used the summits of 500-bp sequences from the differential peaks. motif finding was performed using meme-chip (67) with the default parameters. identified motifs were compared with known motifs using tomtom (68) with the default parameters. fimo (find individual motif occurrences) was used to scan […]

MEME-ChIP institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; Department of Genome Sciences, University of Washington, Seattle, WA, USA; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA; Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia

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