MEMSAT-SVM pipeline

MEMSAT-SVM specifications

Information


Unique identifier OMICS_07204
Name MEMSAT-SVM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Timothy Nugent <>

Publications for MEMSAT-SVM

MEMSAT-SVM IN pipelines

 (2)
2017
PMCID: 5648256
PMID: 29049367
DOI: 10.1371/journal.pone.0186865

[…] expasy proteomic server (http://web.expasy.org/translate/) was used to translate the nkaα sequence of t. squamosa into an amino acid sequence. transmembrane domains were defined using memsat3 and memsat-svm provided by the psipred server (http://bioinf.cs.ucl.ac.uk/psipred/). netphos 2.0 was employed to predict potential phosphorylation sites. in order to confirm the identity of nkaα, […]

2015
PMCID: 4526809
PMID: 26300872
DOI: 10.3389/fmicb.2015.00808

[…] was done using was done using arnold web tool (naville et al., 2011; http://rna.igmors.u-psud.fr/toolbox/arnold/). b. cereus spoiisa membrane topology prediction was done using the memsat3 and memsat-svm algorithms (http://bioinf.cs.ucl.ac.uk/psipred/; nugent and jones, 2009)., the spoiis toxin-antitoxin system in bacillus subtilis consists of a spoiisa toxin that is neutralized […]

MEMSAT-SVM institution(s)
Bioinformatics Group, Department of Computer Science, University College London, Gower Street, London, UK

MEMSAT-SVM reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MEMSAT-SVM