MEMSAT protocols

MEMSAT specifications

Information


Unique identifier OMICS_03886
Name MEMSAT
Alternative name MEMbrane protein Structure And Topology
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pr. David T. Jones <>

Publication for MEMbrane protein Structure And Topology

MEMSAT IN pipelines

 (7)
2017
PMCID: 5462932
PMID: 28642761
DOI: 10.3389/fpls.2017.00865

[…] omega (sievers and higgins, 2014). analysis of conserved protein domains and the prediction of the molecular and cellular functions of these domains were evaluated by the online softwares ffpred and memsat (nugent and jones, 2009; buchan et al., 2010). the phylogenetic tree was generated based on amino acid sequences of major grasses (contreras et al., 2014) that have been studied with mate […]

2017
PMCID: 5648256
PMID: 29049367
DOI: 10.1371/journal.pone.0186865

[…] the expasy proteomic server (http://web.expasy.org/translate/) was used to translate the nkaα sequence of t. squamosa into an amino acid sequence. transmembrane domains were defined using memsat3 and memsat-svm provided by the psipred server (http://bioinf.cs.ucl.ac.uk/psipred/). netphos 2.0 was employed to predict potential phosphorylation sites. in order to confirm the identity […]

2015
PMCID: 4526809
PMID: 26300872
DOI: 10.3389/fmicb.2015.00808

[…] terminators was done using was done using arnold web tool (naville et al., 2011; http://rna.igmors.u-psud.fr/toolbox/arnold/). b. cereus spoiisa membrane topology prediction was done using the memsat3 and memsat-svm algorithms (http://bioinf.cs.ucl.ac.uk/psipred/; nugent and jones, 2009)., the spoiis toxin-antitoxin system in bacillus subtilis consists of a spoiisa toxin […]

2014
PMCID: 4065252
PMID: 24717808
DOI: 10.1534/g3.114.011312

[…] tools were used for alignments, domain prediction, and phylogenetic tree building: ncbi blast (altschul et al. 1990); clustalw2 (larkin et al. 2007); interproscan (quevillon et al. 2005); memsat (jones 2007); tmhmm (krogh et al. 2001); and mega5 (tamura et al. 2011)., staurosporine induces cell death in n. crassa accompanied by typical features like loss of viability, dna […]

2012
PMCID: 3374814
PMID: 22719945
DOI: 10.1371/journal.pone.0038781

[…] were performed using clustalw (by jalview [38]). prediction of tmd length and position of pfcrts or pfcrtr was carried out using the predictors tmhmm2 [39] (www.cbs.dtu.dk/services/tmhmm), memsat [40] (http://saier-144-21.ucsd.edu/barmemsat.html) and split4 [41] (http://split.pmfst.hr/split/4/). sequence of the first tmd of the glycoprotein m1 of the avian coronavirus infectious […]

MEMSAT institution(s)
Department of Computer Science, University College London, London, UK

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