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MemType-2L specifications

Information


Unique identifier OMICS_14977
Name MemType-2L
Interface Web user interface
Restrictions to use None
Input data The protein sequence.
Output data The predicted type of protein.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Hong-Bin Shen

Publication for MemType-2L

MemType-2L citations

 (4)
library_books

A Prediction Model for Membrane Proteins Using Moments Based Features

2016
Biomed Res Int
PMCID: 4761391
PMID: 26966690
DOI: 10.1155/2016/8370132

[…] osition-Specific-Scoring-Matrix (PSSM) based on the protein AA sequences which proved to be a better approach than Functional Domain feature extractions. Chou and Shen in [] implemented a Web server (MemType-2L) which was used as a two-layer predictive engine. The first phase was used to identify the protein sequence as a membrane protein or nonmembrane protein and second phase differentiated the […]

library_books

A Survey of Computational Intelligence Techniques in Protein Function Prediction

2014
Int J Proteomics
PMCID: 4276698
PMID: 25574395
DOI: 10.1155/2014/845479

[…] .imtech.res.in/raghava/gpcrsclass/) [] is the SVM based web server to predict the G-protein coupled receptors and their subfamilies by using amino acid and dipeptide composition of protein sequences. MemType-2L (http://www.csbio.sjtu.edu.cn/bioinf/MemType/) [] is the ensemble classifier based web server to predict the membrane proteins by using pseudoamino acid composition. […]

library_books

Molecular modeling and in silico characterization of Mycobacterium tuberculosis TlyA: Possible misannotation of this tubercle bacilli hemolysin

2011
BMC Struct Biol
PMCID: 3072309
PMID: 21443791
DOI: 10.1186/1472-6807-11-16

[…] ific tool for mycobacterial proteins. Results were compared to subcellular localization predictions obtained from Gpos-PLoc [], PSORTb v2.0.4 [], PA-SUB [], CELLO v2.5 [], LOCtree [], SubLoc v1.0 [], MemType-2L [] and TMBETA-SVM []. The position of RNA binding residues was predicted using the RNAbind server [].β-barrel structures were predicted with PRED-TMBB [http://biophysics.biol.uoa.gr/PRED-TM […]

library_books

Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles

2008
BMC Bioinformatics
PMCID: 2358896
PMID: 18416838
DOI: 10.1186/1471-2105-9-201

[…] multiple sequence alignment in the form of PSSM has been used for predicting secretory proteins. Recently number of study used PSSM profile composition for developing prediction methods; for example MemType-2L, EzyPred, Tbpred, DNAbinder, SRTpred used for predicting membrane, enzyme class, subcellular localization of M. Tuberculosis, DNA binding and secretory proteins respectively [-]. The PSSM f […]

Citations

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MemType-2L institution(s)
Gordon Life Science Institute, San Diego, CA, USA; Institute of Image Processing and Pattern Recognition, Shanghai Jiaotong University, Shanghai, China

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