MeQA specifications


Unique identifier OMICS_00616
Name MeQA
Software type Package/Module, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Operating system Unix/Linux, Mac OS
Programming languages Python, R
Computer skills Advanced
Version 1.0.0
Stability Stable
BWA, samstat, samtools, bedtools, CEAS, MeDIPS
Maintained Yes




No version available


  • person_outline Jinyan Huang

Additional information

Publication for MeQA

MeQA citation


Developmental ORIgins of Healthy and Unhealthy AgeiNg: The Role of Maternal Obesity Introduction to DORIAN

PMCID: 5644840
PMID: 24801105
DOI: 10.1159/000362656

[…] ols such as Novoalign ( or bwa [] for the Illumina platform. Subsequently, the data will be analyzed using specific tools for the analysis of methylated DNA sequencing data, such as MeQA []. Loci exhibiting differential methylation patterns will be compared to their syntenic regions in human and analyzed with motif-finding software, such as Meme [], in order to search for conserv […]

MeQA institution(s)
School of life science, Tongji University, Shanghai, China; Fondation Jean Dausset-CEPH, Paris, France; CEA, Centre National de Génotypage, Evry, France; Hannover Medical School, Hannover, Germany
MeQA funding source(s)
Supported by National Natural Science Foundation of China (grant no. 30900838); National Basic Research Program of China (973 Program No. 2010CB944904); and the European Union framework 7 integrated project READNA (contract no. HEALTH-F4-2008- 201418).

MeQA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MeQA