Mergeomics statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Mergeomics
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Tool usage distribution map

This map represents all the scientific publications referring to Mergeomics per scientific context
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Mergeomics specifications

Information


Unique identifier OMICS_12862
Name Mergeomics
Interface Web user interface
Restrictions to use None
Programming languages C++, R
License Other
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Xia Yang

Information


Unique identifier OMICS_12862
Name Mergeomics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License Other
Computer skills Advanced
Version 1.1.7
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Xia Yang

Publication for Mergeomics

Mergeomics citations

 (3)
library_books

Shared genetic regulatory networks for cardiovascular disease and type 2 diabetes in multiple populations of diverse ethnicities in the USA

2017
PLoS Genet
PMCID: 5634657
PMID: 28957322
DOI: 10.1371/journal.pgen.1007040

[…] the co-expression module. Finally, Benjami-Hochberg FDR was estimated across all modules tested for each GWAS.To evaluate a module across multiple GWAS studies, we employed the Meta-MSEA analysis in Mergeomics, which conducts module-level meta-analysis to retrieve robust signals across studies. Meta-MSEA takes advantage of the parametric estimation of p-values in MSEA by applying Stouffer’s Z sco […]

library_books

Multidimensional Integrative Genomics Approaches to Dissecting Cardiovascular Disease

2017
PMCID: 5327355
PMID: 28289683
DOI: 10.3389/fcvm.2017.00008

[…] d to be associated with the phenotypes of the disease, demonstrating the effectiveness of this integrative method (). Our lab has recently developed a highly generalizable analytical framework, named Mergeomics (, ), to more effectively incorporate multidimensional data and various integration strategies. Mergeomics can reveal pathogenic processes underlying diseases by interrogating enrichment pa […]

library_books

Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems

2016
BMC Genomics
PMCID: 5097440
PMID: 27814671
DOI: 10.1186/s12864-016-3198-9

[…] The MSEA and meta-MSEA components of Mergeomics identify pathways or co-regulated gene sets that are perturbed in a disease. However, these analyses do not provide information on the detailed interactions between disease genes or help ch […]


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Mergeomics institution(s)
Department of Integrative Biology and Physiology, University of California, Los Angeles, CA, USA; South Australian Health and Medical Research Institute, Adelaide, Australia; School of Biological Sciences, University of Adelaide, Adelaide, Australia; Institute of Health Sciences, University of Oulu, Oulu, Finland
Mergeomics funding source(s)
NIH-NCI National Cancer Institute T32CA201160; American Heart Association Scientist Development, Grant 13SDG17290032; Leducq Foundation; NIDDK R01DK104363; American Heart Association Postdoctoral, Fellowship 13POST17240095; China Scholarship Council Scholarship; UCLA Eureka Scholarship

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