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Mergeomics specifications

Information


Unique identifier OMICS_12862
Name Mergeomics
Interface Web user interface
Restrictions to use None
Programming languages C++, R
License Other
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Xia Yang

Information


Unique identifier OMICS_12862
Name Mergeomics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License Other
Computer skills Advanced
Version 1.1.7
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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No version available

Documentation


Maintainer


  • person_outline Xia Yang

Publication for Mergeomics

Mergeomics citations

 (2)
library_books

Shared genetic regulatory networks for cardiovascular disease and type 2 diabetes in multiple populations of diverse ethnicities in the USA

2017
PLoS Genet
PMCID: 5634657
PMID: 28957322
DOI: 10.1371/journal.pgen.1007040

[…] further, we comprehensively curated functional genomics and gene networks derived from 25 tissue or cell types relevant to cvd and t2d. a streamlined integration of these rich data sources using our mergeomics pipeline [, ] enabled the identification of shared pathways, gene subnetworks, and key regulators for both cvd and t2d across cohorts and ethnicities. finally, we validated the subnetworks […]

library_books

Multidimensional Integrative Genomics Approaches to Dissecting Cardiovascular Disease

2017
PMCID: 5327355
PMID: 28289683
DOI: 10.3389/fcvm.2017.00008

[…] to be associated with the phenotypes of the disease, demonstrating the effectiveness of this integrative method (). our lab has recently developed a highly generalizable analytical framework, named mergeomics (, ), to more effectively incorporate multidimensional data and various integration strategies. mergeomics can reveal pathogenic processes underlying diseases by interrogating enrichment […]


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Mergeomics institution(s)
Department of Integrative Biology and Physiology, University of California, Los Angeles, CA, USA; South Australian Health and Medical Research Institute, Adelaide, Australia; School of Biological Sciences, University of Adelaide, Adelaide, Australia; Institute of Health Sciences, University of Oulu, Oulu, Finland
Mergeomics funding source(s)
NIH-NCI National Cancer Institute T32CA201160; American Heart Association Scientist Development, Grant 13SDG17290032; Leducq Foundation; NIDDK R01DK104363; American Heart Association Postdoctoral, Fellowship 13POST17240095; China Scholarship Council Scholarship; UCLA Eureka Scholarship

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