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Publication for MeRy-B
When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors
[…] Since the formation of the Metabolomics Standards Initiative (MSI) in 2005, a number of metabolomics data repositories, such as MetaboLights, Metabolomics Workbench, Metabolomics Repository Bordeaux (MeRy-B), or the Metabolic Phenotype Database (MetaPhen) have been developed [,,,,]. Those databases represent a rich resource of data, in particular for metadata studies. In addition to those data rep […]
The Chemistry of Plant–Microbe Interactions in the Rhizosphere and the Potential for Metabolomics to Reveal Signaling Related to Defense Priming and Induced Systemic Resistance
[…] y the number of identified metabolites (; , ). Recently, a number of databases incorporating MS or nuclear magnetic resonance (NMR)-based metabolomics and statistical tools have been developed, i.e., MeRy-B, MeltDB, and SetupX (; ). Also, a number of integrated databases (e.g., plantmetabolomics.org) are also emerging (). These include full annotation of metabolites, metabolic profiling and statis […]
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it
[…] n OmicsDI (Perez-Riverol et al. ). These studies with data publicly available in dedicated repositories [MetaboLights (Haug et al. ), Metabolomics Workbench (Sud et al. ), MetaPhen (Carroll et al. ), MeRy-B (Ferry-Dumazet et al. ) and GNPS (Wang et al. )], directly link to 368 unique journal articles (as of 15th September 2017). 45.4% of these 368 journal articles are published in ten journals (Fi […]
Metabolomics in melon: A new opportunity for aroma analysis
[…] sing workflow within the MetAlign software package, were as described previously by and . The netCDF files have been deposited, with associated metadata, into the Metabolomics Repository of Bordeaux MeRy-B (http://services.cbib.u-bordeaux2.fr/MERYB/public/PublicREF.php?REF=M08004). […]
Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions
[…] ious plant species in recent years (, , ).A number of information resources have become available in recent years to provide tools for metabolome analysis, such as PRIMe (http://prime.psc.riken.jp/), MeRy-B (http://www.cbib.u-bordeaux2.fr/MERYB/) and MetabolomeExpress (https://www.metabolome-express.org/) (, , ). The review by ) provides a well summarized list of web resources for plant metabolomi […]
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