MeT-DB specifications

Information


Unique identifier OMICS_06210
Name MeT-DB
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Maintainers


  • person_outline Yufei Huang
  • person_outline Jia Meng
  • person_outline Xing Chen

Publications for MeT-DB

MeT-DB citations

 (2)
library_books

m6AVar: a database of functional variants involved in m6A modification

2017
Nucleic Acids Res
PMCID: 5753261
PMID: 29036329
DOI: 10.1093/nar/gkx895

[…] and accumulating data on the m6A machinery, databases on m6A modification have emerged in recent years. In 2015, Liu et al. collected 74 samples from 22 different m6A-seq experiments and constructed MeT-DB, the first comprehensive m6A database of the mammalian transcriptome (). Later, Sun et al. developed the RNA modification database called ‘RMBase’ that includes 226 000 m6A sites and 10 005 m5C […]

library_books

Distinct 5 methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain

2017
Genome Biol
PMCID: 5225599
PMID: 28077169
DOI: 10.1186/s13059-016-1139-1

[…] All available mouse m6A peaks obtained with MACS2 (https://pypi.python.org/pypi/MACS2) [] were downloaded from MeT-DB [] and combined into a single BED file with unique peaks. The resulting BED file was transferred from mm9 to mm10, and peak sequences were extracted from the mm10 genome. These sequences were t […]

MeT-DB institution(s)
School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu, China; Department of Biological Sciences, Xi’an Jiaotong-Liverpool University, Suzhou, Jiangsu, China; Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX, USA; Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi’an, China; Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; Department of Epidemiology and Biostatistics, University of Texas Health at San Antonio, San Antonio, TX, USA
MeT-DB funding source(s)
Supported by the China Fundamental Research Funds for the Central Universities [2014QNA84]; National Natural Science Foundation of China [31671373, 61401370, 61473232, 61772531, 11631014, 61501466]; National Institute of Health [R01GM113245, R01CA124332].

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