Meta-aligner protocols

View Meta-aligner computational protocol

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Meta-aligner specifications

Information


Unique identifier OMICS_16292
Name Meta-aligner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Pacific Biosciences
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Babak Hossein Khalaj <>

Publication for Meta-aligner

Meta-aligner in pipeline

2009
PMCID: 2808936
PMID: 19906699
DOI: 10.1093/nar/gkp972

[…] (,,)., ensembl genetrees are the result of a comprehensive analysis to predict phylogeny in vertebrates and have recently been described in detail (). the latest improvements include the use of the meta-aligner m-coffee () and incorporation of information about exon boundaries into the alignments. we now restrict our calculation of pairwise dn/ds values such that they are only calculated […]


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Meta-aligner in publications

 (2)
PMCID: 5091917
PMID: 27806058
DOI: 10.1371/journal.pone.0164888

[…] on chr19 of human genome hg19 for both noiseless and noisy reads. we have shown significant improvement on coverage bound for real genome is achieved by using this method. for processing machine, meta-aligner [] scheme is used to align reads on the reference genome., the longer the read lengths, more reduction on number of read bases will be achieved by our method. a number of next generation […]

PMCID: 2808936
PMID: 19906699
DOI: 10.1093/nar/gkp972

[…] (,,)., ensembl genetrees are the result of a comprehensive analysis to predict phylogeny in vertebrates and have recently been described in detail (). the latest improvements include the use of the meta-aligner m-coffee () and incorporation of information about exon boundaries into the alignments. we now restrict our calculation of pairwise dn/ds values such that they are only calculated […]


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Meta-aligner institution(s)
Department of Electrical Engineering, Sharif University of Technology, Azadi, Tehran, Iran; Department of Computer Engineering, Sharif University of Technology, Azadi, Tehran, Iran

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