MetaABC statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MetaABC
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Tool usage distribution map

This map represents all the scientific publications referring to MetaABC per scientific context
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MetaABC specifications

Information


Unique identifier OMICS_19333
Name MetaABC
Alternative name Metagenomics platform for data Adjustment Binning and Clustering
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Accepts data in two different forms: (i) sequences or (ii) a three-column, tab-delimited abundance table.
Input format SFF, FASTQ, FASTA, TSV
Output data Generates two sub-directories which the user specifies: (i) abundance: including the abundance of different taxonomic levels, and (ii) chart: including the pie and bar charts of different taxonomic levels.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements
BLAST
Source code URL http://metaabc.iis.sinica.edu.tw/Web_Service/download/MetaABC_nodata.tar.gz
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Huai-Kuang Tsai
  • person_outline Daryi Wang

Additional information


http://metaabc.iis.sinica.edu.tw/README

Publication for Metagenomics platform for data Adjustment Binning and Clustering

MetaABC citation

library_books

Web Resources for Metagenomics Studies

2015
PMCID: 4678780
PMID: 26602607
DOI: 10.1016/j.gpb.2015.10.003

[…] MetaABC is an integrated metagenomics platform for data adjustment, binning, and clustering. Its primary focus is data filtration and normalization techniques for improving taxonomic assignment in met […]


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MetaABC institution(s)
Institute of Information Science, Academia Sinica, Taipei, Taiwan; Research Center for Information Technology Innovation, Academia Sinica, Taipei, Taiwan; Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan; Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
MetaABC funding source(s)
Supported by Institute of Information Science; Academia Sinica; National Science Council of Taiwan under grants (NSC 99-2627- B-001-005-MY3 and NSC99-2627-B-001-003).

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