MetaAmp protocols

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description
MetaAmp computational protocol

MetaAmp specifications

Information


Unique identifier OMICS_18130
Name MetaAmp
Interface Web user interface
Restrictions to use None
Input data A metagenomic sequence.
Input format Fastq, Fasta
Programming languages Javascript, Perl
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline mstrous <>

Publication for MetaAmp

MetaAmp IN pipeline

2017
PMCID: 5691128
PMID: 29146960
DOI: 10.1038/s41467-017-01544-x

[…] libraries were pooled and normalized for sequencing on the illumina miseq sequencer (san diego, ca) using the 2 × 300 bp miseq reagent kit v3. the resulting amplicon sequences were analyzed with metaamp18,19. operational taxonomic units (otus) were identified with a threshold of 97% sequence similarity., shotgun metagenomic sequencing (2 × 75 bp) of three replicates of each mock community […]

MetaAmp institution(s)
Department of Geoscience, University of Calgary, Calgary, AB, Canada; Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
MetaAmp funding source(s)
This research was funded by a Campus Alberta Innovation Chair, a NSERC Discovery grant, an Alberta Innovates Technology Futures iCORE grant, a NSERC Banting postdoctoral fellowship, the Government of Canada through Genome Canada, the Government of Alberta through Genome Alberta, Genome Prairie, Research Manitoba and Genome Quebec, and the Canada First Research Excellence Fund.

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