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Publication for Metab2MeSH
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
[…] ke Metmask  for managing different identifiers, Chemical Translation Service (CTS)  for translation of chemical identifiers, PhenoMeter  for querying databases based on metabolic phenotype, and Metab2MeSH  for a more efficient literature search that automatically annotates compounds with the concepts defined in MeSH, providing a fast link between the compound and the literature.Different v […]
Metabolomics and Diabetes: Analytical and Computational Approaches
[…] ngs (MeSH) to link them to publications (http://metab2mesh.ncibi.org) (). shows the annotations generated by the Cytoscape plugin MetDisease (http://apps.cytoscape.org/apps/metdisease) that uses the Metab2MeSH data set for the BCAA degradation network ().In summary, the development of methods and tools for analysis and visualization of metabolomics data remains an active area of research. […]
MeSH ORA framework: R/Bioconductor packages to support MeSH over representation analysis
[…] s and is expected to become an exhaustive annotation resource for ORA. In fact, some tools for MeSH ORA are already available, such as Biocompass , Gendoo , Gene2mesh http://gene2mesh.ncibi.org/, Metab2mesh  and Genemesh . However, in certain cases, the implementation of these tools is still not sufficient, for the reasons described below. 1) Few CUI environments With the exception of the […]
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