MetaboAnalyst statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MetaboAnalyst
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Tool usage distribution map

This map represents all the scientific publications referring to MetaboAnalyst per scientific context
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Associated diseases

This word cloud represents MetaboAnalyst usage per disease context
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Popular tool citations

chevron_left Metabolic network analysis Metabolite identification Clustering Data normalization Metabolite identification Data normalization Data integration Chemometric analysis Statistical analysis Clustering/Classification Statistical analysis chevron_right
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Protocols

MetaboAnalyst specifications

Information


Unique identifier OMICS_02652
Name MetaboAnalyst
Alternative names Metabolomics Pathway Analysis, MetaboAnalystR
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 4.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/MetaboAnalyst

Subtools


  • MetATT
  • MetPA
  • MSEA

Maintainers


  • person_outline David Wishart
  • person_outline Jianguo Xia
  • person_outline Jianguo Xia

Information


Unique identifier OMICS_02652
Name MetaboAnalyst
Alternative names Metabolomics Pathway Analysis, MetaboAnalystR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

Subtools


  • MetATT
  • MetPA
  • MSEA

Download


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Versioning


No version available

Maintainers


  • person_outline David Wishart
  • person_outline Jianguo Xia
  • person_outline Jianguo Xia

Publications for MetaboAnalyst

MetaboAnalyst citations

 (421)
library_books

Metabolic reprogramming of the urea cycle pathway in experimental pulmonary arterial hypertension rats induced by monocrotaline

2018
PMCID: 5948901
PMID: 29751839
DOI: 10.1186/s12931-018-0800-5

[…] etric test to evaluate whether a particular metabolite set is represented more than expected by chance within a given compound list. Differential metabolites and their concentrations were imported to MetaboAnalyst 3.0 to exploit the most disturbed metabolic pathways via over representation analysis. The metabolites that discriminate PAH were involved in 17 pathways (Fig. ). After the results were […]

library_books

Alterations in Cell Motility, Proliferation, and Metabolism in Novel Models of Acquired Temozolomide Resistant Glioblastoma

2018
Sci Rep
PMCID: 5940876
PMID: 29740146
DOI: 10.1038/s41598-018-25588-1

[…] to ensure reproducibility of retention indices and derivatization. Data was processed, aligned, and analyzed using ChromaTOF v. 4.51.6.0 with the statistical compare function (Leco, St. Joseph, MI), Metaboanalyst, and in house software MetaboLyzer as previously described. […]

library_books

Simultaneous quantification of serum monounsaturated and polyunsaturated phosphatidylcholines as potential biomarkers for diagnosing non small cell lung cancer

2018
Sci Rep
PMCID: 5940703
PMID: 29740076
DOI: 10.1038/s41598-018-25552-z

[…] and the RI tolerance was 5,000. Metabolic features detected in less than 50% of all QC samples were discarded. The UHPLC-Q-TOF/MS and GC-TOF/MS data were normalised and evaluated the distribution by MetaboAnalystR. […]

library_books

Lower plasma trans 4 hydroxyproline and methionine sulfoxide levels are associated with insulin dysregulation in horses

2018
PMCID: 5930486
PMID: 29716602
DOI: 10.1186/s12917-018-1479-z

[…] tus to assign horses to either of the two experimental groups: IS or ID. This was conducted by a hierarchical clustering algorithm using the Euclidean distance measure and Ward’s clustering method in MetaboAnalyst 3.0 [].Plasma metabolome data (absolute concentrations of compounds) were analyzed in MetaboAnalyst after normalization by Pareto scaling. All data were tested and confirmed to be normal […]

library_books

Plasma metabolomic biomarkers accurately classify acute mild traumatic brain injury from controls

2018
PLoS One
PMCID: 5909890
PMID: 29677216
DOI: 10.1371/journal.pone.0195318

[…] Biomarker discovery and validation/replication analyses were carried out utilizing the logistic regression (LR) and ROC AUC functions on the MetaboAnalyst 3.0 platform (http://www.metaboanalyst.ca/faces/ModuleView.xhtml) [] and other defined analytic methods [–]. Input untargeted metabolomic data files, from two comparison groups, are uplo […]

call_split

The Exposure to Different Photoperiods Strongly Modulates the Glucose and Lipid Metabolisms of Normoweight Fischer 344 Rats

2018
Front Physiol
PMCID: 5917113
PMID: 29725308
DOI: 10.3389/fphys.2018.00416
call_split See protocol

[…] tistical significance was set at bilateral 5%.Principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) were performed after data normalization and autoscaling using MetaboAnalyst 3.0 software (). […]


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MetaboAnalyst institution(s)
Institute of Parasitology, McGill University, Montreal, QC, Canada; Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada; Canadian Center for Computational Genomics, McGill University, Montreal, QC, Canada; Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA; Department of Human Genetics, McGill University, Montreal, QC, Canada; Department of Computing Science, University of Alberta, Edmonton, AB, Canada; Department of Animal Science, McGill University, Montreal, QC, Canada
MetaboAnalyst funding source(s)
Supported by McGill University; Natural Sciences and Engineering Research Council of Canada (NSERC), Canadian Institutes of Health Research (CIHR), Genome Canada, Canada Research Chairs Program (CRC).

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