MetaboAnalyst pipeline

MetaboAnalyst specifications

Information


Unique identifier OMICS_02652
Name MetaboAnalyst
Alternative names Metabolomics Pathway Analysis, MetaboAnalystR
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 4.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/MetaboAnalyst

Subtools


  • MetATT
  • MetPA
  • MSEA

Maintainers


  • person_outline David Wishart <>
  • person_outline Jianguo Xia <>
  • person_outline Jianguo Xia <>

Information


Unique identifier OMICS_02652
Name MetaboAnalyst
Alternative names Metabolomics Pathway Analysis, MetaboAnalystR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

Subtools


  • MetATT
  • MetPA
  • MSEA

Download


Versioning


Add your version

Maintainers


  • person_outline David Wishart <>
  • person_outline Jianguo Xia <>
  • person_outline Jianguo Xia <>

Publications for MetaboAnalyst

MetaboAnalyst IN pipelines

 (7)
2018
PMCID: 5863097
PMID: 29425024
DOI: 10.1021/acs.analchem.7b04073

[…] data set is available upon request to the corresponding authors., statistical analysis, network/pathway analysis, and metabolite set enrichment analysis were performed in rstudio v0.99.48666 and metaboanalyst 3.0.30 metabolites were identified with analytical standards and accurate mass matching in kegg25 and hmdb27 using custom dataset-wide and feature-specific deconvolution […]

2018
PMCID: 5878833
PMID: 29628813
DOI: 10.1007/s11306-018-1352-x

[…] and technology, gaithersburg, md, usa), golmdb (kopka et al. 2005) and fiehnlib (kind et al. 2009) databases. annotated metabolites were normalized by internal standard and protein amount. finally, metaboanalyst 3.0 (xia et al. 2015) was used for statistical analysis., since s. cerevisiae has been used as a system for modeling mitochondrial diseases (goffeau et al. 1996; herrgard et al. 2008; […]

2017
PMCID: 5665457
PMID: 28798136
DOI: 10.1242/dmm.030411

[…] processed data were also analysed by applying unsupervised pca, and pairwise comparisons of classes by applying supervised pls-da; both of these analyses were performed in the open-access software metaboanalyst (xia et al., 2012). metabolites were manually clustered into classes defining similar chemical structure or metabolic pathway to identify biologically relevant and robust metabolic […]

2016
PMCID: 5085796
PMID: 27783056
DOI: 10.3390/ijms17101772

[…] index and match score in nist [47], golmdb [48], and fiehnlib [49] databases. the maximal retention index variance was 5% and the minimal match score 750. the remaining metabolites were analyzed by metaboanalyst 3.0 [50] with normalization by internal standard and peak area sum of each sample. an auto scaling was applied by dividing mean-centered peak areas with a standard deviation […]

2016
PMCID: 5085796
PMID: 27783056
DOI: 10.3390/ijms17101772

[…] with cross validation using leave one out cross validation; and hierarchical cluster analysis according to pearson and ward. significantly changed metabolites were applied to a pathway analysis by metaboanalyst based on the kegg database., the funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. manuel schlimpert and bernd […]

MetaboAnalyst institution(s)
Institute of Parasitology, McGill University, Montreal, QC, Canada; Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada; Canadian Center for Computational Genomics, McGill University, Montreal, QC, Canada; Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA; Department of Human Genetics, McGill University, Montreal, QC, Canada; Department of Computing Science, University of Alberta, Edmonton, AB, Canada; Department of Animal Science, McGill University, Montreal, QC, Canada
MetaboAnalyst funding source(s)
Supported by McGill University; Natural Sciences and Engineering Research Council of Canada (NSERC), Canadian Institutes of Health Research (CIHR), Genome Canada, Canada Research Chairs Program (CRC).

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