Metabolab protocols

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Metabolab specifications

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Unique identifier OMICS_02848
Name Metabolab
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Medium
Version 0.99.8.2
Stability Stable
Maintained No

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Publication for Metabolab

library_books

MetaboLab--advanced NMR data processing and analysis for metabolomics.

2011 BMC Bioinformatics
PMCID: 3179975
PMID: 21914187
DOI: 10.1186/1471-2105-12-366
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig
Christian Ludwig

Metabolab in pipelines

 (2)
2016
PMCID: 5013418
PMID: 27651926
DOI: 10.1136/rmdopen-2016-000289

[…] (bruker biospin, billerica, massachusetts, usa) equipped with a 5 mm tci cryogenically cooled probe and an autosampler at 30°c. following acquisition, spectra were processed using nmrlab and metabolab. metabolite assignment and quantification were performed using several database. , uplc–ms analysis on lipid fraction was performed on a q exactive hybrid quadrupole-orbitrap mass […]

2013
PMCID: 3871890
PMID: 24251761
DOI: 10.1021/ac403111s

[…] 0.1 ms mixing time, and 4 s acquisition time at 25 °c. for chemometric analysis the data sets were zero-filled, fourier-transformed and phase corrected in nmrlab. spectra were then transferred to metabolab, and baseline correction was applied using common control points. analyte peaks were aligned using icoshift() and signals for background and internal controls were excluded. the spectra […]


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Metabolab in publications

 (15)
PMCID: 5811808
PMID: 29503875
DOI: 10.21956/wellcomeopenres.14535.r29772

[…] was possible because of the cryogenic probe and will quite possibly lead to probe damage when using a nmr system equipped with a room temperature probe., the spectra were processed within the metabolab software package (version 1.0.0.1) . 0.5hz line broadening was applied with zero-filling the data up to 131072 real data points prior to fourier transformation. the resulting spectra […]

PMCID: 5471228
PMID: 28615704
DOI: 10.1038/s41598-017-03108-x

[…] resonance by excitation sculpting pulse sequence and using at least 128 scans and 8 dummy scans, 32768 data points, and a spectral width of 8012.820 hz. raw data were processed using mrslab and metabolab, in the matlab programming environment (mathworks inc., natick, ma). post processing of mrs spectra included scaling according to the probabilistic quotient normalization (pqn), segment […]

PMCID: 5403747
PMID: 28487605
DOI: 10.3748/wjg.v23.i15.2685

[…] (tmsp) as an internal chemical shift standard. 1d-1h-noesy spectra were collected at 298 k with a 12 ppm spectral width, 32k data points and 256 scans., spectra were processed using nmrlab and metabolab programmes[,] within matlab, version r2015b (mathworks, massachusetts, united states). briefly, the first data point was multiplied by 0.5, a line-broadening window function was applied […]

PMCID: 5288314
PMID: 28152423
DOI: 10.1016/j.neo.2016.11.003

[…] concentrations, one well-resolved peak was picked for each metabolite in the first spectrum, and peaks were picked in the other spectra in an automated manner using in-house subroutines of metabolab . the mean and standard deviations for that metabolite for different classes were calculated using matlab functions mean and std., respectively. the shapiro-wilk test was used to test […]

PMCID: 5131479
PMID: 27905491
DOI: 10.1038/srep38074

[…] and excitation sculpting on a bruker drx 500 mhz nmr spectrometer equipped with a cryoprobe. data were calibrated with respect to the trimethylsilyl propionate (tmsp) signal. spectra were read into metabolab software in matlab (r2011a, the math works, natick ma) and segmented into 0.005 ppm chemical shift ‘bins’, and spectral areas within each bin were integrated. when used in this paper ppm […]


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Metabolab institution(s)
The Henry Wellcome Building for Biomolecular NMR Spectroscopy, School of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, UK

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This software is not obsolete and well maintained. Please have a look at: http://metabolab.uk