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Metabolic engineering analysis software tools and databases

Growing concerns over limited fossil resources and associated environmental problems are motivating the development of sustainable processes for the production of chemicals, fuels and materials from renewable resources. Metabolic engineering is a key enabling technology for…

Metabolic engineering steps

Experts in Metabolic engineering

They share and annotate bioinformatics tools

  • Marouen Ben Guebila's avatar image
    Marouen Ben Guebila
    Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg, Luxembourg

Most recent bioinformatics tools

CalR
Desktop

CalR

Offers a platform for performing a statistical analysis of indirect calorimetry…

Offers a platform for performing a statistical analysis of indirect calorimetry data. CalR is an open source software that provides six standardized templates suited for common practices. The…

IsoDyn
Desktop

IsoDyn Isotopomer Dynamics

Allows users to simulate an environment for the dynamics of metabolite labeling…

Allows users to simulate an environment for the dynamics of metabolite labeling by 13C isotopes in metabolic reactions of living cells. IsoDyn is a standalone software which utilizes a classical…

Iso2Flux
Desktop

Iso2Flux

Provides a software capable of 13C assisted fluxomics. Iso2Flux is an…

Provides a software capable of 13C assisted fluxomics. Iso2Flux is an application capable of integrating a wide array of experimental data (metabolites secretions and uptakes, gene expression and…

BridgIT
Web

BridgIT

Attributes protein sequences to both de novo and orphan reactions. BridgIT…

Attributes protein sequences to both de novo and orphan reactions. BridgIT employs the reaction fingerprints to compare enzymatic reactions. It introduces an additional level of specificity by…

Most popular analytical software and databases

fastcore
Desktop

fastcore

A generic algorithm for reconstructing context-specific metabolic network…

A generic algorithm for reconstructing context-specific metabolic network models from global genome-wide metabolic network models such as Recon X. fastcore takes as input a core set of reactions that…

PROXiMATE
Dataset

PROXiMATE

Provides unbiased training and validation datasets for the development of…

Provides unbiased training and validation datasets for the development of algorithms to predict binding affinity changes due to missense mutations. The PROXiMATE database helps about the study of…

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