Metabolic engineering analysis software tools and databases

Growing concerns over limited fossil resources and associated environmental problems are motivating the development of sustainable processes for the production of chemicals, fuels and materials from renewable resources. Metabolic engineering is a…

Metabolic engineering applications

Most recent bioinformatics tools

PROXiMATE
Dataset

PROXiMATE

Provides unbiased training and validation datasets for the development of…

Provides unbiased training and validation datasets for the development of algorithms to predict binding affinity changes due to missense mutations. The PROXiMATE database helps about the study of…

PSOMCS
Desktop

PSOMCS Particle Swarm Optimization Constrained Minimal cut Set

Obtains optimal designs of metabolic networks satisfying multiple objectives.…

Obtains optimal designs of metabolic networks satisfying multiple objectives. PSOMCS uses particle swarm optimization along with the direct calculation of concept of constrained minimal cut sets from…

LASER
Dataset

LASER Learning Assisted Strain EngineeRing

A repository for metabolic engineering strain designs and a formal standard for…

A repository for metabolic engineering strain designs and a formal standard for disseminating designs to metabolic engineers. LASER, provides an immense resource of metabolic engineering knowledge…

BeReTa
Desktop

BeReTa Beneficial Regulator Targeting

An algorithm for prioritization of transcriptional regulator (TR) manipulation…

An algorithm for prioritization of transcriptional regulator (TR) manipulation targets, which makes use of unintegrated network models. BeReTa identifies TR manipulation targets by evaluating…

Curators for Metabolic engineering

  • Marouen Ben Guebila's avatar image
    Marouen Ben Guebila
    Luxembourg Centre for Systems…
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