Metabolic engineering analysis software tools and databases

Growing concerns over limited fossil resources and associated environmental problems are motivating the development of sustainable processes for the production of chemicals, fuels and materials from renewable resources. Metabolic engineering is a key enabling technology for…

Metabolic engineering steps

Most recent bioinformatics tools

GCM
Dataset

GCM Global Catalogue of Microorganisms

Allows members to organize, make public, and explore their data resources. GCM…

Allows members to organize, make public, and explore their data resources. GCM is an online catalogue and a data management system that contains information from (i) culture collection staff, (ii)…

L4FC
Desktop

L4FC

Provides an efficient algorithm for generic Flux Coupling Analysis (FCA). L4FC…

Provides an efficient algorithm for generic Flux Coupling Analysis (FCA). L4FC is an algorithmic framework for double and multiple knockouts in qualitative models of metabolic networks. This method…

SASITA
Desktop

SASITA

Enables to enumerate all stoichiometrically feasible minimal precursor sets in…

Enables to enumerate all stoichiometrically feasible minimal precursor sets in both models, steady-state and machinery-duplicating. SASITA is a method that can be used in a wide variety of…

PyFBA
Desktop

PyFBA

Allows bioinformaticians to build and explore flux-balance analysis (FBA)…

Allows bioinformaticians to build and explore flux-balance analysis (FBA) models using the Python programming language. PyFBA is a python module that also permits to build models from genomes,…

Most popular analytical software and databases

fastcore
Desktop

fastcore

A generic algorithm for reconstructing context-specific metabolic network…

A generic algorithm for reconstructing context-specific metabolic network models from global genome-wide metabolic network models such as Recon X. fastcore takes as input a core set of reactions that…

Curators for Metabolic engineering

  • Marouen Ben Guebila's avatar image
    Marouen Ben Guebila
    Luxembourg Centre for Systems…
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