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Metabolic pathway comparison software tools | Metabolic engineering

In molecular biology, the comparative analysis of organisms exhibiting different phenotypes is still mostly performed on the level of genes. However, many genes encode proteins that are involved in complex metabolic pathways, whose functions result…
FMM
Web

FMM From Metabolite to Metabolite

It can reconstruct metabolic pathways form one metabolite to another metabolite…

It can reconstruct metabolic pathways form one metabolite to another metabolite among different species, based mainly on the Kyoto Encyclopedia of Genes and Genomes (KEGG) database and other…

KEGG Mapper
Web

KEGG Mapper

Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and…

Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple…

PathwayBooster
Desktop

PathwayBooster

An open-source software tool to support the manual comparison and curation of…

An open-source software tool to support the manual comparison and curation of metabolic models. It combines gene annotations from GenBank files and other sources with information retrieved from the…

EC2KEGG
Desktop

EC2KEGG

A perl-based package to perform comparative analysis of metabolic pathways…

A perl-based package to perform comparative analysis of metabolic pathways between two organisms. EC2KEGG provides a platform independent toolkit for automated comparison of identified sets of…

CPA
Web

CPA Comparative Pathway Analyzer

Allows users to realize metabolic pathway analysis. CPA aims at finding unique…

Allows users to realize metabolic pathway analysis. CPA aims at finding unique metabolic reaction content that is worth to be further analyzed. This tool provides a visualization engine for…

ComPath
Web

ComPath

Provides an interactive pathway analysis and annotation environment/workbench…

Provides an interactive pathway analysis and annotation environment/workbench by integrating multiple data sources and analysis tools. ComPath represents biological pathways on a spreadsheet-style…

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