MetaboLights statistics

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Protocols

MetaboLights specifications

Information


Unique identifier OMICS_02535
Name MetaboLights
Restrictions to use None
Community driven Yes
Data access File download, Browse
User data submission Allowed
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/MetaboLights

Maintainers


  • person_outline Reza M. Salek
  • person_outline Christoph Steinbeck

Additional information


Tutorial: http://www.ebi.ac.uk/metabolights/help

Publications for MetaboLights

MetaboLights citations

 (38)
call_split

Deletion of transketolase triggers a stringent metabolic response in promastigotes and loss of virulence in amastigotes of Leishmania mexicana

2018
PLoS Pathog
PMCID: 5882173
PMID: 29554142
DOI: 10.1371/journal.ppat.1006953
call_split See protocol

[…] ubtracted. Metabolites identified based on match with respective standards are indicated, the rest is predicted based on mass and retention time. Metabolomics data have been deposited to the EMBL-EBI MetaboLights database (10.1093/nar/gks1004. PubMed PMID: 23109552) with the identifier MTBLS491. […]

library_books

Survival, gene and metabolite responses of Litoria verreauxii alpina frogs to fungal disease chytridiomycosis

2018
Sci Data
PMCID: 5839156
PMID: 29509187
DOI: 10.1038/sdata.2018.33

[…] data from skin and liver tissues for each frog from Experiment B (n=61). These data have been scaled by dividing by the summed ion signal (total ion chromatogram). Dataset 8 has been submitted to the MetaboLights data repository (Data Citation 3). An alternative presentation of this data is also contained as a single comma-separated file (.csv format) (Dataset 9; Data Citation 1), with full descri […]

library_books

When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors

2018
PMCID: 5876533
PMID: 29495643
DOI: 10.3390/ht7010007

[…] give valuable advice on good laboratory practices in this regard [,,,]. Since the formation of the Metabolomics Standards Initiative (MSI) in 2005, a number of metabolomics data repositories, such as MetaboLights, Metabolomics Workbench, Metabolomics Repository Bordeaux (MeRy-B), or the Metabolic Phenotype Database (MetaPhen) have been developed [,,,,]. Those databases represent a rich resource of […]

library_books

Caveat Usor: Assessing Differences between Major Chemistry Databases

2018
ChemMedChem
PMCID: 5900829
PMID: 29451740
DOI: 10.1002/cmdc.201700724

[…] nsion in situ in October and so should search against this externally as the latest version. With comprehensive coverage in mind, users would thus need to check WikiPathways (unique to PC) as well as MetaboLights (unique to UC)., However, they would also need to check the first Recon set as loaded (also unique to UC) in October 2014. However, this has not been updated to the latest published Reco […]

library_books

Beyond genomics: understanding exposotypes through metabolomics

2018
Hum Genomics
PMCID: 5787293
PMID: 29373992
DOI: 10.1186/s40246-018-0134-x

[…] chromatographic data) and metadata (e.g., details on how samples were obtained and the analytical methods that were used) to the repository []. In addition, the European Union funded data repository MetaboLights (http://www.ebi.ac.uk/metabolights/) has already assembled data from 317 metabolomics studies as of December 2017. Common data submission formats, such as mzML/mzXML for mass spectrometry […]

library_books

Lipidomics unveils the complexity of the lipidome in metabolic diseases

2018
PMCID: 5786598
PMID: 29374337
DOI: 10.1186/s40169-018-0182-9

[…] analysis platform should also include automated searches against metabolite databases such as lipid MAPS (http://www.lipidmaps.org), Lipid Bank (http://lipidbank.jp/), LipidHOME (http://www.ebi.ac.uk/metabolights/lipidhome) and LipidBlast (http://fiehnlab.ucdavis.edu/projects/lipidblast) [, ]. Freely available software which combines one or more of the above steps includes the Analysis of Lipid Ex […]

Citations

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MetaboLights institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK; Department of Biological Sciences, University of Alabama, Tuscaloosa, AL, USA; School of Biosciences, University of Birmingham, Birmingham; Wageningen University & Research, Wageningen Plant Research - Bioscience, Wageningen, Netherlands; Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University, Jena, Germany
MetaboLights funding source(s)
Supported by the Biotechnology and Biological Sciences Research Council (BBSRC), Grant Numbers BB/I000933/1 and BB/L024152/1.

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