MAGI specifications

Unique identifier:
OMICS_22790
Interface:
Web user interface
Input data:
A metabolite identification file of LCMS features and a protein or gene sequence.
Computer skills:
Basic
Maintained:
Yes
Name:
Metabolite, Annotation, and Gene Integration
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Stability:
Stable

MAGI specifications

Unique identifier:
OMICS_22790
Software type:
Application/Script
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Programming languages:
Python
Stability:
Stable
Name:
Metabolite, Annotation, and Gene Integration
Interface:
Command line interface
Input data:
A metabolite identification file of LCMS features and a protein or gene sequence.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

versioning

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MAGI distribution

download

MAGI support

Maintainers

  • Ben Bowen <>
  • Trent Northen <>
  • Ben Bowen <>
  • Trent Northen <>

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Credits

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Publications

Institution(s)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Data Analytics and Visualization Group, Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; National Energy Research Scientific Computing Center, Lawrence Berkeley National Laborator, Berkeley, CA, USA

Funding source(s)

Supported by the U.S. Department of Energy Office of Science by the Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA) Program, the U.S. Department of Energy Joint Genome Institute (JGI), and the National Energy Research Scientific Computing Center (NERSC) – a DOE Office of Science User Facility – all under Contract No. DE-AC02-05CH11231.

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