Metabolite Detector protocols

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Metabolite Detector specifications

Information


Unique identifier OMICS_02659
Name Metabolite Detector
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Karsten Hiller <>

Publication for Metabolite Detector

Metabolite Detector in pipeline

2017
PMCID: 5553085
PMID: 28868138
DOI: 10.5256/f1000research.12777.r23714

[…] was computer controlled and was ramped from 45°c to 215°c in over 65 mins. data pre-processing was performed in the agilent masshunter suit (version 8 of qualitative workflows and profinder), metabolite detector (version 2.5), and amdis (automated mass spectral deconvolution and identification system) (version 2.72), and the accuracy of data extraction of these software tools […]


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Metabolite Detector in publications

 (19)
PMCID: 5863803
PMID: 29566661
DOI: 10.1186/s12864-018-4609-x

[…] throughout the analysis the injection port temperature was kept constant at 250 °c for optimal analysis., the analysis of the polar metabolites was done by processing the gc-ms raw data files using metabolite detector as stated previously []. briefly, the retention indices (ri) calibration was carried out based on the analyses of a mixture of fames internal standards (c8-c28). the data […]

PMCID: 5840182
PMID: 29511263
DOI: 10.1038/s41598-018-22338-1

[…] with a waters mass spectrometer (waters corp., milford, ma, usa) was used to perform gc-ms. an ms range of 50–800 m/z was used for scanning and the generated mass spectra were processed using the metabolite detector 2.06 software (technische universitat carolo-wilhelmina zu braunschweig, braunschweig, germany). metabolites were identified based on the golm metabolome database–. named […]

PMCID: 5553085
PMID: 28868138
DOI: 10.5256/f1000research.12777.r23714

[…] was computer controlled and was ramped from 45°c to 215°c in over 65 mins. data pre-processing was performed in the agilent masshunter suit (version 8 of qualitative workflows and profinder), metabolite detector (version 2.5), and amdis (automated mass spectral deconvolution and identification system) (version 2.72), and the accuracy of data extraction of these software tools […]

PMCID: 5438104
PMID: 28542173
DOI: 10.1371/journal.pbio.2001390

[…] before [], with the following exceptions: helium flow was set to 1.1 ml/min, and the temperature was increased to a final 325°c. the solvent delay time was 5.80 min. data analysis was performed with metabolite detector (version 2.07; []), and quantification was done using 1 unique fragment ion for each metabolite. for statistical analysis, data were first normalized by dividing the peak area […]

PMCID: 5397800
PMID: 28424077
DOI: 10.1186/s13054-017-1672-7

[…] (waters corp., milford, ma, usa), using a gas chromatography time-of-flight mass spectrometry technique. the mass spectrometer was programmed in the range of 50–800 mass-to-charge ratio. using metabolite detector software (version 2.06; institut für biochemie & biotechnologie, technische universität carolo-wilhelmina zu braunschweig, braunschweig, germany), mass spectra were processed […]


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Metabolite Detector institution(s)
Department of Bioinformatics and Biochemistry, Technische Universität Braunschweig, Braunschweig, Germany

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