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Metabolite enrichment analysis software tools | Metabolomics

While many tools exist for performing enrichment analysis of transcriptomic and proteomic data in order to interpret them in biological terms, almost no equivalent tools exist for metabolomic data.Source text:(Chagoyen and Pazos 2011) MBRole:…
MSEA
Web

MSEA Metabolite Set Enrichment Analysis

A web-based tool to help identify and interpret patterns of metabolite…

A web-based tool to help identify and interpret patterns of metabolite concentration changes in a biologically meaningful context for human and mammalian metabolomic studies. Key to the development…

iMet-Q
Desktop

iMet-Q intelligent Metabolomic Quantitation

An automated tool with friendly user interfaces for quantifying metabolites in…

An automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. iMet-Q has a complete quantitation procedure for noise…

zeroSum
Desktop

zeroSum

Allows the transfer of metabolic signatures across labs. zeroSum identifies the…

Allows the transfer of metabolic signatures across labs. zeroSum identifies the same biomarkers regardless of the scaling method. It can be used for small data sets and reduced precision. This tool…

MPEA
Web

MPEA Metabolite Pathway Enrichment Analysis

A rapid tool for functional analysis and biological interpretation of metabolic…

A rapid tool for functional analysis and biological interpretation of metabolic profiling data. MPEA follows the concept of gene set enrichment analysis (GSEA) and tests whether metabolites involved…

BiNChE
Web

BiNChE

An enrichment analysis tool for small molecules based on the ChEBI Ontology.…

An enrichment analysis tool for small molecules based on the ChEBI Ontology. BiNChE displays an interactive graph that can be exported as a high-resolution image or in network formats. The tool…

MBRole
Web

MBRole Metabolite Biological Role

Performs overrepresentation (enrichment) analysis of categorical annotations…

Performs overrepresentation (enrichment) analysis of categorical annotations for a set of compounds of interest. These categorical annotations correspond to biological and chemical information…

IMPaLA
Web

IMPaLA

A web tool for the joint pathway analysis of transcriptomics or proteomics and…

A web tool for the joint pathway analysis of transcriptomics or proteomics and metabolomics data. IMPaLA performs over-representation or enrichment analysis with user-specified lists of metabolites…

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