1. Directory
  2. Fluxomics
  3. 13C-fluxomics
Join community Sign in
By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.

Metabolomic software tools and databases

Metabolomics can generally be defined as the study of global metabolite profiles in a system (cell, tissue or organism) under a given set of conditions (Goodacre et al., 2004).

AtMetExpress

OMIC_04809

AtMetExpress

Phytochemical accumulation is analyzed during development of the model plant Arabidopsis…

Phytochemical accumulation is analyzed during development of the model plant Arabidopsis thaliana using liquid chromatography-mass spectrometry (LC-MS) in samples covering many growth stages and organs. MS/MS spectral tags of many metabolites are…

COVAriance INverse engineering

OMIC_06094

COVAriance INverse engineering
COVAIN

A statistical data analysis software that runs under Matlab enviroment. Though COVAIN was…

A statistical data analysis software that runs under Matlab enviroment. Though COVAIN was initially designed for metabolomics data processing, it can analyze other types of omics data, such as proteomics and transcriptomics. COVAIN gets its name…

Database of Odorant Responses

OMIC_11846

Database of Odorant Responses
DoOR

A database that combines all available Drosophila odorant response data into a single…

A database that combines all available Drosophila odorant response data into a single consensus response matrix. DoOR gives reliable odorant-responses for nearly all Drosophila olfactory responding units, listing 693 odorants, for a total of 7381…

Husermet

OMIC_10413

Husermet

A large scale and non-targeted chromatographic MS-based metabolomics study, using samples…

A large scale and non-targeted chromatographic MS-based metabolomics study, using samples from over 1,000 individuals, to provide a comprehensive measurement of their serum metabolomes. This work provides an important baseline or reference dataset…

KNApSAcK

OMIC_04813

KNApSAcK

An extensive species-metabolite DB for plants which contains 101,500 species-metabolite…

An extensive species-metabolite DB for plants which contains 101,500 species-metabolite relationships encompassing 20,741 species and 50,048 metabolites. A search engine was developed within the KNApSAcK Core DB for use in metabolomics research,…

MeKO

OMIC_04811

MeKO

Metabolomic characterization of Knock-Out mutants in Arabidopsis. MeKO allows evaluation…

Metabolomic characterization of Knock-Out mutants in Arabidopsis. MeKO allows evaluation of whether a mutation affects metabolism during normal plant growth and contains images of mutants, data on differences in metabolite accumulation, and…

MeRy-B

OMIC_04812

MeRy-B

A plant metabolomics platform allowing the storage and visualisation of Nuclear Magnetic…

A plant metabolomics platform allowing the storage and visualisation of Nuclear Magnetic Resonance (NMR) metabolic profiles from plants. MeRy-B is a web-based application with either public or private access. It is designed to fill a knowledgebase…

metaP-server

OMIC_07519

metaP-server

Provides automated and standardized data analysis for quantitative metabolomics data,…

Provides automated and standardized data analysis for quantitative metabolomics data, covering the following steps from data acquisition to biological interpretation: (i) data quality checks, (ii) estimation of reproducibility and batch effects,…

SoyMetDB

OMIC_04808

SoyMetDB

A metabolomic database for soybean, developed to target the growing needs of the soybean…

A metabolomic database for soybean, developed to target the growing needs of the soybean community. The goal is to provide a one-stop web resource for integrating, mining and visualizing soybean metabolomic data, including identification and…

Yeast Metabolome Database

OMIC_04807

Yeast Metabolome Database
YMDB

A manually curated database of small molecule metabolites found in or produced by…

A manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae. YMDB covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. It contains…