MetaboSignal specifications

Information


Unique identifier OMICS_14421
Name MetaboSignal
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.10.0
Stability Stable
Requirements
AnnotationDbi, stats, graphics, BiocGenerics, utils, BiocStyle, RUnit, biomaRt, R(>=3.3), rmarkdown, knitr, org.Hs.eg.db, EnsDb.Hsapiens.v75, RCurl, KEGGgraph, igraph, KEGGREST, hpar, MWASTools, mygene
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Marc-Emmanuel Dumas <>

Publication for MetaboSignal

MetaboSignal in publication

PMCID: 5933288
DOI: 10.1080/20013078.2018.1461450

[…] and gene set enrichment analysis identified groups of mirs that are de under t2dm. employing a network approach, we integrated mir, protein and metabolic data by using our newly developed r package metabosignal, integrating interaction information from various databases., results: to understand relationships in the network, we derived shortest paths connecting pf and pf exosome de proteins […]


To access a full list of publications, you will need to upgrade to our premium service.

MetaboSignal institution(s)
Computational and Systems Medicine, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, UK; Sorbonne Universities, University Pierre & Marie Curie, University Paris Descartes, Sorbonne Paris Cité, INSERMUMR_S 1138, Cordeliers Research Centre, Paris, France
MetaboSignal funding source(s)
This work was supported by Medical Research Council Doctoral Training Centre PhD scholarship (MR/ K501281/1), Imperial College PhD-scholarship (EP/M506345/1), La Caixa studentship, Portuguese Foundation for Science and Technology (SFRH/BD/52036/2012), the European Commission (FGENTCARD, LSHG-CT-2006-037683, EURATRANS, HEALTH-F4- 2010-241504, METACARDIS, HEALTH-F4-2012-305312).

MetaboSignal reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MetaboSignal