MetaboSignal specifications
Information
| Unique identifier | OMICS_14421 |
|---|---|
| Name | MetaboSignal |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Version | 1.10.0 |
| Stability | Stable |
| Requirements |
AnnotationDbi, stats, graphics, BiocGenerics, utils, BiocStyle, RUnit, biomaRt, R(>=3.3), rmarkdown, knitr, org.Hs.eg.db, EnsDb.Hsapiens.v75, RCurl, KEGGgraph, igraph, KEGGREST, hpar, MWASTools, mygene
|
| Maintained | Yes |
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Documentation
Maintainer
- person_outline Marc-Emmanuel Dumas <>
Publication for MetaboSignal
library_books
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways.
2016 Bioinformatics
PMCID: 5408820
PMID: 28011775
DOI: 10.1093/bioinformatics/btw697
MetaboSignal in publication
library_books
ISEV2018 abstract book
PMCID: 5933288
DOI: 10.1080/20013078.2018.1461450
[…] and gene set enrichment analysis identified groups of mirs that are de under t2dm. employing a network approach, we integrated mir, protein and metabolic data by using our newly developed r package metabosignal, integrating interaction information from various databases., results: to understand relationships in the network, we derived shortest paths connecting pf and pf exosome de proteins […]
MetaboSignal institution(s)
Computational and Systems Medicine, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, UK; Sorbonne Universities, University Pierre & Marie Curie, University Paris Descartes, Sorbonne Paris Cité, INSERMUMR_S 1138, Cordeliers Research Centre, Paris, France
MetaboSignal funding source(s)
This work was supported by Medical Research Council Doctoral Training Centre PhD scholarship (MR/ K501281/1), Imperial College PhD-scholarship (EP/M506345/1), La Caixa studentship, Portuguese Foundation for Science and Technology (SFRH/BD/52036/2012), the European Commission (FGENTCARD, LSHG-CT-2006-037683, EURATRANS, HEALTH-F4- 2010-241504, METACARDIS, HEALTH-F4-2012-305312).
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