MetaboSignal specifications


Unique identifier OMICS_14421
Name MetaboSignal
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.10.0
Stability Stable
AnnotationDbi, stats, graphics, BiocGenerics, utils, BiocStyle, RUnit, biomaRt, R(>=3.3), rmarkdown, knitr,, EnsDb.Hsapiens.v75, RCurl, KEGGgraph, igraph, KEGGREST, hpar, MWASTools, mygene
Maintained Yes



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  • person_outline Marc-Emmanuel Dumas <>

Publication for MetaboSignal

MetaboSignal in publication

PMCID: 5933288
DOI: 10.1080/20013078.2018.1461450

[…] and gene set enrichment analysis identified groups of mirs that are de under t2dm. employing a network approach, we integrated mir, protein and metabolic data by using our newly developed r package metabosignal, integrating interaction information from various databases., results: to understand relationships in the network, we derived shortest paths connecting pf and pf exosome de proteins […]

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MetaboSignal institution(s)
Computational and Systems Medicine, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, UK; Sorbonne Universities, University Pierre & Marie Curie, University Paris Descartes, Sorbonne Paris Cité, INSERMUMR_S 1138, Cordeliers Research Centre, Paris, France
MetaboSignal funding source(s)
This work was supported by Medical Research Council Doctoral Training Centre PhD scholarship (MR/ K501281/1), Imperial College PhD-scholarship (EP/M506345/1), La Caixa studentship, Portuguese Foundation for Science and Technology (SFRH/BD/52036/2012), the European Commission (FGENTCARD, LSHG-CT-2006-037683, EURATRANS, HEALTH-F4- 2010-241504, METACARDIS, HEALTH-F4-2012-305312).

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