MetaCluster-TA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MetaCluster-TA
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Tool usage distribution map

This map represents all the scientific publications referring to MetaCluster-TA per scientific context
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Associated diseases

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Popular tool citations

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MetaCluster-TA specifications

Information


Unique identifier OMICS_01473
Name MetaCluster-TA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Yi Wang

Publications for MetaCluster-TA

MetaCluster-TA citations

 (2)
library_books

Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics

2016
Comput Struct Biotechnol J
PMCID: 5148923
PMID: 27980708
DOI: 10.1016/j.csbj.2016.11.005

[…] d into the final bins by automatic k-means clustering algorithm using Spearman distance. The approach from MetaCluster 5.0 has also been adapted for utilization in an annotation pipeline and is named MetaCluster-TA . […]

library_books

Exploiting topic modeling to boost metagenomic reads binning

2015
BMC Bioinformatics
PMCID: 4402587
PMID: 25859745
DOI: 10.1186/1471-2105-16-S5-S2

[…] based on sequence overlapping. However, it can not bin reads of low abundance. MetaCluster 5.0 is an extension of MetaCluster 4.0 for handling reads of low abundance. Recently, Wang et al. developed MetaCluster-TA [], an assembly-assisted binning-based annotation tool for taxonomic annotation of reads. It assembles reads into long "virtual contigs", and then applies a method like MetaCluster 5.0 […]


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MetaCluster-TA institution(s)
Department of Computer Science, The University of Hong Kong, Hong Kong, China

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