MetaCluster-TA statistics

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MetaCluster-TA specifications

Information


Unique identifier OMICS_01473
Name MetaCluster-TA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Yi Wang <>

Publications for MetaCluster-TA

MetaCluster-TA in publications

 (2)
PMCID: 5148923
PMID: 27980708
DOI: 10.1016/j.csbj.2016.11.005

[…] into the final bins by automatic k-means clustering algorithm using spearman distance. the approach from metacluster 5.0 has also been adapted for utilization in an annotation pipeline and is named metacluster-ta ., particular groups of different taxonomy independent strategies lay different requirements on input data; while the sequence composition based strategies can work directly […]

PMCID: 4402587
PMID: 25859745
DOI: 10.1186/1471-2105-16-S5-S2

[…] based on sequence overlapping. however, it can not bin reads of low abundance. metacluster 5.0 is an extension of metacluster 4.0 for handling reads of low abundance. recently, wang et al. developed metacluster-ta [], an assembly-assisted binning-based annotation tool for taxonomic annotation of reads. it assembles reads into long "virtual contigs", and then applies a method like metacluster 5.0 […]


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MetaCluster-TA institution(s)
Department of Computer Science, The University of Hong Kong, Hong Kong, China

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