MetaCore pipeline

MetaCore specifications

Information


Unique identifier OMICS_02716
Name MetaCore
Interface Web user interface
Restrictions to use License purchase required
License Commercial
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jaimie Brown <>

MetaCore IN pipelines

 (3)
2017
PMCID: 5459575
PMID: 28492364
DOI: 10.7554/eLife.25155.018

[…] in wildtype group. the list of differentially expressed, filtered genes was deposited at datadryad (http://dx.doi.org/10.5061/dryad.202fn). the data were also subjected to pathway analysis using the metacore software (thomson reuters, ny) and top 50 pathways with a p-value<0.05 are displayed in figure 6—source data 1., naïve or differentiated t cells were stimulated with pma (20 ng/ml) […]

2016
PMCID: 4948771
PMID: 27427759
DOI: 10.1371/journal.pone.0159295

[…] in bioconductor. differentially expressed genes (degs) were defined as those with a fold change ≥ 2 and a false discovery rate (fdr) of ≤ 5%. functional enrichment of these genes was done using metacore™ (genego™, thomson reuters, ny) to identify clusters of genes mapping to specific biological pathways or disease associations. to identify potential targets of micrornas, targetscan database […]

2012
PMCID: 3285075
PMID: 22276848
DOI: 10.1186/1471-2164-13-45

[…] rna sequencing. sequence reads were assembled and analyzed in clc genomics workbench. gene ontology (go) and pathway analysis were performed using the blast2go program and genego application of metacore program., a total of 16,892 genes were expressed in transition lactation, 19,094 genes were expressed in peak lactation and 18,070 genes were expressed in late lactation. regardless […]

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