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Publications for MetaCrop
SABIO RK: an updated resource for manually curated biochemical reaction kinetics
[…] abases and online platforms which allows the users of these external resources to gain further knowledge about enzymatic activities of enzymes (links from UniProtKB, BRENDA, NextProt (), ChloroKB (), MetaCrop) and detailed information about kinetics of biochemical reactions (links from KEGG Reaction, MetaNetX (), BKMS-react ()) as well as the participation and meaning of compounds (links from ChEB […]
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
[…] mation about metabolic pathways in over 800 pathways of 350 plant species. Usefully, the platform provides “evidence codes” to clearly indicate the type of support associated with each database item. MetaCrop  is a pathway database containing information about 7 major crop plants and 2 model plants that allows integration of experimental data into metabolic pathways, as well as the automatic exp […]
Creating views on integrated multidomain data
[…] oller concept and other Software Design Patterns. Together with the plugin-based structure of Vanted, it is easy to extend the functionality even at run time, such as additional database access, e.g. MetaCrop () and DBE (), simulation capabilities, e.g. flux balance analysis (), mapping functions and visualization algorithms. The Add-on is available at http://vanted.ipk-gatersleben.de/hive/ and is […]
Systematic integration of experimental data and models in systems biology
[…] also been developed by Radrich et al., (2010) to integrate data from KEGG and AraCyc to reconstruct qualitative genome-scale models of Arabidopsis thaliana . In addition, a Java application called MetaCrop has been developed by Weise et al., (2009) to reconstruct quantitative models of metabolic pathways for plants which can then be simulated using COPASI . Furthermore, a software tool called […]
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