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MetaCrop specifications

Information


Unique identifier OMICS_02717
Name MetaCrop
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Publications for MetaCrop

MetaCrop citations

 (4)
library_books

SABIO RK: an updated resource for manually curated biochemical reaction kinetics

2017
Nucleic Acids Res
PMCID: 5753344
PMID: 29092055
DOI: 10.1093/nar/gkx1065

[…] abases and online platforms which allows the users of these external resources to gain further knowledge about enzymatic activities of enzymes (links from UniProtKB, BRENDA, NextProt (), ChloroKB (), MetaCrop) and detailed information about kinetics of biochemical reactions (links from KEGG Reaction, MetaNetX (), BKMS-react ()) as well as the participation and meaning of compounds (links from ChEB […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] mation about metabolic pathways in over 800 pathways of 350 plant species. Usefully, the platform provides “evidence codes” to clearly indicate the type of support associated with each database item. MetaCrop [] is a pathway database containing information about 7 major crop plants and 2 model plants that allows integration of experimental data into metabolic pathways, as well as the automatic exp […]

library_books

Creating views on integrated multidomain data

2011
Bioinformatics
PMCID: 3117374
PMID: 21551150
DOI: 10.1093/bioinformatics/btr282

[…] oller concept and other Software Design Patterns. Together with the plugin-based structure of Vanted, it is easy to extend the functionality even at run time, such as additional database access, e.g. MetaCrop () and DBE (), simulation capabilities, e.g. flux balance analysis (), mapping functions and visualization algorithms. The Add-on is available at http://vanted.ipk-gatersleben.de/hive/ and is […]

library_books

Systematic integration of experimental data and models in systems biology

2010
BMC Bioinformatics
PMCID: 3008707
PMID: 21114840
DOI: 10.1186/1471-2105-11-582

[…] also been developed by Radrich et al., (2010) to integrate data from KEGG and AraCyc to reconstruct qualitative genome-scale models of Arabidopsis thaliana []. In addition, a Java application called MetaCrop has been developed by Weise et al., (2009) to reconstruct quantitative models of metabolic pathways for plants which can then be simulated using COPASI []. Furthermore, a software tool called […]

Citations

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MetaCrop institution(s)
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany; Martin Luther University Halle-Wittenberg, Institute of Computer Science, Halle, Germany
MetaCrop funding source(s)
Supported by the German Federal Ministry of Education and Research.

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