Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Web user interface|
|Restrictions to use||None|
|Input data||Protein sequence|
|Input format||FASTA, Raw|
Publication for MetaDBSite
Identification and Characterization of the Diverse Stress Responsive R2R3 RMYB Transcription Factor from Hibiscus sabdariffa L.
[…] ins bind DNA. This outcome diversified the overall functional characteristics, as well as sequence homology, environmental response, and cellular localization .Modeling and interaction studies like metaDBSite analysis further authenticate the functional interaction of RMYB domain with the nucleic acid. About >76% of predicted DNA-protein active binding residues was found within the R2R3 DNA-bind […]
A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs
[…] reported prediction approaches have been summarized in . Slow programs DR_bind1 and RBRDetector were only tested on part of the datasets and the results are provided in the supplementary information. metaDBSite shows same result as BindN and was not tested explicitly. […]
An Overview of the Prediction of Protein DNA Binding Sites
[…] A-binding site prediction. For example, the prediction method DISPLAR was constructed using two-layer neural networks , and SeqPredNet was constructed using a delicate three-layered network . The metaDBSite integrated six online Web servers to predict and analyze DNA-binding sites, and showed higher accuracy and sensitivity . These studies provide diverse and useful prediction tools for prot […]
Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins
[…] vices or available standalone programs (). The methods are BindN (), BindN+ (), BindN-RF (), DBS-Pred (), DBS-PSSM (), DNABindR (), DP-Bind with three categories, binary, BLOSUM and PSSM encoding (), metaDBSite () and NAPS (). The details about the name, features, technique, reference and link for the methods used in the present work are listed in Supplementary Table S1. These methods used differe […]
Characterization and prediction of the binding site in DNA binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters
[…] equence-based prediction methods of DNA-binding sites, such as DP-Bind (), DBSpred (), DBS-PSSM () and BindN () in terms of their reported accuracy, sensitivity and specificity. A very recent method, metaDBSite that integrated results from other web-servers including a few of those mentioned above can predict solely on the basis of sequence information and reports a sensitivity of 77% (). While th […]
Computational systems biology: integration of sequence, structure, network, and dynamics
[…] duce the computational complexity.Protein-DNA interactions play an important role in many fundamental biological activities such as DNA replication, transcription and repair. JingNa Si et al. present metaDBSite, a meta web server to predict DNA-binding residues for DNA-binding proteins. MetaDBSite integrates the prediction results from six available online web servers: DISIS, DNABindR, BindN, Bind […]
Looking to check out a full list of citations?
Be the first to review MetaDBSite