MetaDomain specifications

Information


Unique identifier OMICS_14527
Name MetaDomain
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Sequence reads, list of protein domains
Output data A list of domains encoded in the underlying data set and the number of aligned reads
Operating system Unix/Linux, Mac OS
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Yuan Zhang

Publication for MetaDomain

MetaDomain citations

 (2)
library_books

Methylation of histone H4 lysine 20 by PR Set7 ensures the integrity of late replicating sequence domains in Drosophila

2016
Nucleic Acids Res
PMCID: 5009726
PMID: 27131378
DOI: 10.1093/nar/gkw333

[…] domain bin, were also included. The γ-H2A.v log2 differences and replication timing values within each bin were then calculated and the respective means across all domains were plotted to generate a metadomain. […]

library_books

Classification of Metagenomics Data at Lower Taxonomic Level Using a Robust Supervised Classifier

2015
Evol Bioinform Online
PMCID: 4309676
PMID: 25673967
DOI: 10.4137/EBO.S20523

[…] taxonomic classification fall into two main categories: similarity-based methods and composition- based methods. Similarity-based methods, such as BLAST,2 CARMA,3 MEGAN,4 TreePhyler,5 MLTreeMap,6 and MetaDomain,7 can be used to identify evolutionary relationships of DNA fragments in comparison to a database of reference sequences. But similarity-based methods usually can only be used to classify t […]

MetaDomain institution(s)
Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA

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