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MetaFluxNet specifications


Unique identifier OMICS_05176
Name MetaFluxNet
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for MetaFluxNet

MetaFluxNet citations


Activation of the Glutamic Acid Dependent Acid Resistance System in Escherichia coli BL21(DE3) Leads to Increase of the Fatty Acid Biotransformation Activity

PLoS One
PMCID: 5040553
PMID: 27681369
DOI: 10.1371/journal.pone.0163265

[…] ng (LP), thereby resulting in a set of metabolic flux distribution corresponding to the optimal phenotype []. In the current work, the LP problem was solved using a stand-alone flux analysis program, MetaFluxNet []. The specific growth rate measured during the exponential growth phase was compared with the cell growth predicted by the in silico model to validate results, as previously reported []. […]


CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data

BMC Syst Biol
PMCID: 4263207
PMID: 25466481
DOI: 10.1186/s12918-014-0123-1

[…] sification of models according to determinacy and redundancy. However, it is also built over Matlab and is itself a commercial tool, although it allows an academic license. A few software tools, like MetaFluxNet and SBRT [], execute matrix operations to calculate flux distributions without the application of optimization methods. Also, importing metabolic flux ratios to constrain MFA methods is a […]


FluxMap: A VANTED add on for the visual exploration of flux distributions in biological networks

BMC Syst Biol
PMCID: 3403919
PMID: 22548786
DOI: 10.1186/1752-0509-6-33

[…] are exists with partially overlapping features compared to FluxMap, as summarized in Table . The majority of tools provide the possibility to import flux data from other sources. This is not true for MetaFluxNet and OptFlux, which compute and analyze internal simulation-derived flux data. On the other hand, only these tools and FluxMap are able to process substance and mass fluxes. As a common fea […]


Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network

BMC Syst Biol
PMCID: 3287480
PMID: 22784571
DOI: 10.1186/1752-0509-5-S2-S14

[…] , a previously reported genome-scale metabolic network model of E. coli was used []. This model is comprised of 979 reactions and 814 metabolites. Simulations were performed using the program package MetaFluxNet [] and GAMS (GAMS Development Corp., Washington DC, USA) for the optimization technique developed in this study as detailed below. […]


Integrative genome scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery

Mol Syst Biol
PMCID: 3049409
PMID: 21245845
DOI: 10.1038/msb.2010.115

[…] ring simulation results with experimental results from literature, and accordingly further refined so as to use it for in silico drug-targeting analysis. The metabolic network was reconstructed using MetaFluxNet (), and was converted into GAMS (GAMS Development Corp., Washington DC, USA) for subsequent drug-targeting simulations. The SBML version of VvuMBEL943 was deposited to the BioModels Databa […]


The genome scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies

Microb Cell Fact
PMCID: 3004842
PMID: 21092328
DOI: 10.1186/1475-2859-9-94

[…] on of the Z. mobilis ZM4 metabolic model, we used different softwares and databases, which include NCBI [], CMR [], KEGG [], TCDB [], TransportDB [], ExPASy [], BioCyc [], BioSilico [], MFAML [], and MetaFluxNet []. […]


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MetaFluxNet institution(s)
Metabolic and Biomolecular Engineering National Research Laboratory, Korea; Advanced Institute of Science and Technology, Yuseong-gu, Daejeon, Korea

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