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MetaFluxNet specifications

Information


Unique identifier OMICS_05176
Name MetaFluxNet
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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No version available

Publication for MetaFluxNet

MetaFluxNet citations

 (8)
library_books

Activation of the Glutamic Acid Dependent Acid Resistance System in Escherichia coli BL21(DE3) Leads to Increase of the Fatty Acid Biotransformation Activity

2016
PLoS One
PMCID: 5040553
PMID: 27681369
DOI: 10.1371/journal.pone.0163265

[…] ng (LP), thereby resulting in a set of metabolic flux distribution corresponding to the optimal phenotype []. In the current work, the LP problem was solved using a stand-alone flux analysis program, MetaFluxNet []. The specific growth rate measured during the exponential growth phase was compared with the cell growth predicted by the in silico model to validate results, as previously reported []. […]

library_books

CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data

2014
BMC Syst Biol
PMCID: 4263207
PMID: 25466481
DOI: 10.1186/s12918-014-0123-1

[…] sification of models according to determinacy and redundancy. However, it is also built over Matlab and is itself a commercial tool, although it allows an academic license. A few software tools, like MetaFluxNet and SBRT [], execute matrix operations to calculate flux distributions without the application of optimization methods. Also, importing metabolic flux ratios to constrain MFA methods is a […]

library_books

FluxMap: A VANTED add on for the visual exploration of flux distributions in biological networks

2012
BMC Syst Biol
PMCID: 3403919
PMID: 22548786
DOI: 10.1186/1752-0509-6-33

[…] are exists with partially overlapping features compared to FluxMap, as summarized in Table . The majority of tools provide the possibility to import flux data from other sources. This is not true for MetaFluxNet and OptFlux, which compute and analyze internal simulation-derived flux data. On the other hand, only these tools and FluxMap are able to process substance and mass fluxes. As a common fea […]

library_books

Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network

2011
BMC Syst Biol
PMCID: 3287480
PMID: 22784571
DOI: 10.1186/1752-0509-5-S2-S14

[…] , a previously reported genome-scale metabolic network model of E. coli was used []. This model is comprised of 979 reactions and 814 metabolites. Simulations were performed using the program package MetaFluxNet [] and GAMS (GAMS Development Corp., Washington DC, USA) for the optimization technique developed in this study as detailed below. […]

library_books

Integrative genome scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery

2011
Mol Syst Biol
PMCID: 3049409
PMID: 21245845
DOI: 10.1038/msb.2010.115

[…] ring simulation results with experimental results from literature, and accordingly further refined so as to use it for in silico drug-targeting analysis. The metabolic network was reconstructed using MetaFluxNet (), and was converted into GAMS (GAMS Development Corp., Washington DC, USA) for subsequent drug-targeting simulations. The SBML version of VvuMBEL943 was deposited to the BioModels Databa […]

library_books

The genome scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies

2010
Microb Cell Fact
PMCID: 3004842
PMID: 21092328
DOI: 10.1186/1475-2859-9-94

[…] on of the Z. mobilis ZM4 metabolic model, we used different softwares and databases, which include NCBI [], CMR [], KEGG [], TCDB [], TransportDB [], ExPASy [], BioCyc [], BioSilico [], MFAML [], and MetaFluxNet []. […]

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MetaFluxNet institution(s)
Metabolic and Biomolecular Engineering National Research Laboratory, Korea; Advanced Institute of Science and Technology, Yuseong-gu, Daejeon, Korea

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