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MetaFluxNet specifications

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Unique identifier OMICS_05176
Name MetaFluxNet
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MetaFluxNet

MetaFluxNet in publications

 (5)
PMCID: 5040553
PMID: 27681369
DOI: 10.1371/journal.pone.0163265

[…] (lp), thereby resulting in a set of metabolic flux distribution corresponding to the optimal phenotype []. in the current work, the lp problem was solved using a stand-alone flux analysis program, metafluxnet []. the specific growth rate measured during the exponential growth phase was compared with the cell growth predicted by the in silico model to validate results, as previously reported […]

PMCID: 3287480
PMID: 22784571
DOI: 10.1186/1752-0509-5-S2-S14

[…] a previously reported genome-scale metabolic network model of e. coli was used []. this model is comprised of 979 reactions and 814 metabolites. simulations were performed using the program package metafluxnet [] and gams (gams development corp., washington dc, usa) for the optimization technique developed in this study as detailed below., simulation of the metabolic network model along […]

PMCID: 3049409
PMID: 21245845
DOI: 10.1038/msb.2010.115

[…] simulation results with experimental results from literature, and accordingly further refined so as to use it for in silico drug-targeting analysis. the metabolic network was reconstructed using metafluxnet (), and was converted into gams (gams development corp., washington dc, usa) for subsequent drug-targeting simulations. the sbml version of vvumbel943 was deposited to the biomodels […]

PMCID: 3004842
PMID: 21092328
DOI: 10.1186/1475-2859-9-94

[…] of the z. mobilis zm4 metabolic model, we used different softwares and databases, which include ncbi [], cmr [], kegg [], tcdb [], transportdb [], expasy [], biocyc [], biosilico [], mfaml [], and metafluxnet []., constraints-based flux analysis is a method for studying metabolic networks with the assumption of a pseudo-steady state and constraints are imposed by mass balance […]

PMCID: 2993897
PMID: 20842468
DOI: 10.1007/s12265-010-9223-5

[…] from 19 male and 2 female patients (mean age 56 ± 16) with nidcm undergoing crt. metabolite fluxes/mvo2 and extraction fractions were calculated. flux balance analysis (fba) was performed with metafluxnet 1.8 on a metabolic network of the cardiac mitochondria (189 reactions, 230 metabolites) reconstructed from mitochondrial proteomic data (615 proteins) from human heart tissue. […]


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MetaFluxNet institution(s)
Metabolic and Biomolecular Engineering National Research Laboratory, Korea; Advanced Institute of Science and Technology, Yuseong-gu, Daejeon, Korea

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