MGA specifications

Information


Unique identifier OMICS_01490
Name MGA
Alternative name MetaGeneAnnotator
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Genomic sequences
Input format FASTA
Computer skills Basic
Stability Beta
Maintained Yes

Information


Unique identifier OMICS_01490
Name MGA
Alternative name MetaGeneAnnotator
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Genomic sequences
Input format FASTA
Output format Number of surplus (untranslated) nucleotides at the 5'-end of the predicted ORF, the estimated score of predicted gene, if the predicted gene structure is complete or partial, selected model for predicting the gene.
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Beta
Maintained Yes

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MGA article

MGA citation

2014
PMCID: 4164917

[…] for these publicly available data sets is displayed in supplementary file 5., sup05 sag contigs were annotated with the metavir web server (roux et al., 2014). briefly, orfs were predicted with metageneannotator (noguchi et al., 2008) and compared to the refseqvirus database with blastp (altschul et al., 1997). in order to select viral-associated contigs, we looked for viral-specific genes, […]

MGA institution(s)
Advanced Science and Technology Research Group, Mitsubishi Research Institute, Inc; Tokyo, Japan

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