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A web app and a package for gene prediction which precisely predicts all kinds of prokaryotic genes from a single or a set of anonymous genomic sequences having a variety of lengths. MetaGeneAnnotator integrates statistical models of prophage genes, in addition to those of bacterial and archaeal genes, and also uses a self-training model from input sequences for predictions. The MGA can precisely predict genes even on short genomic sequences. Both typical and atypical genes can be sensitively and precisely detected while keeping high specificity.

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MGA classification

MGA specifications

Unique identifier:
OMICS_01490
Interface:
Web user interface
Input data:
Genomic sequences
Computer skills:
Basic
Maintained:
Yes
Name:
MetaGeneAnnotator
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Stability:
Beta

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MGA forum

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MGA classification

MGA specifications

Unique identifier:
OMICS_01490
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS
Stability:
Beta
Name:
MetaGeneAnnotator
Interface:
Command line interface
Input data:
Genomic sequences
Output format:
Number of surplus (untranslated) nucleotides at the 5'-end of the predicted ORF, the estimated score of predicted gene, if the predicted gene structure is complete or partial, selected model for predicting the gene.
Computer skills:
Advanced
Maintained:
Yes

MGA distribution

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Publications

Institution(s)

Advanced Science and Technology Research Group, Mitsubishi Research Institute, Inc; Tokyo, Japan

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