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MEtaGenome ANalyzer MEGAN

Uses to interactively analyze and compare metagenomic and metatranscriptomic data, both taxonomically and functionally. To perform a taxonomic analysis, the program places the reads onto the NCBI taxonomy, while functional analysis is performed by mapping reads to the SEED, COG, and KEGG classifications. Samples can be compared taxonomically and functionally, using a wide range of different charting and visualization techniques. PCoA analysis and clustering methods allow high-level comparison of large numbers of samples. Different attributes of the samples can be captured and used within analysis. The program supports various input formats for loading data and can export analysis results in different text-based and graphical formats.

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MEGAN forum

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MEGAN versioning

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MEGAN classification

MEGAN specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Version:
5.0
Maintained:
Yes
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Stability:
Stable

MEGAN support

Documentation

Maintainer

  • Daniel H. Huson <>

Credits

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Publications

Institution(s)

Center for Bioinformatics, University of Tübingen, Tübingen, Germany

Link to literature

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