MetaFast specifications

Unique identifier:
OMICS_12071
Software type:
Toolkit/Suite
Restrictions to use:
None
Output data:
The MetaFast output includes the following results: (i) k-mer frequency statistics for each metagenome; (ii) nonbranching paths for each metagenome; (iii) extracted components and component statistics file; (iv) feature vector for each metagenome; (v) pairwise dissimilarity matrix; (vi) dissimilarity heatmap with a dendrogram.
Programming languages:
Java
Stability:
Stable
Name:
METAgenome FAST analysis toolkit
Interface:
Command line interface
Input format:
MetaFast accepts input sequence files of FASTQ and FASTA formats. Input files can also be compressed with gzip of bzip2.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

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MetaFast support

Documentation

Maintainer

  • Vladimir I. Ulyantsev <>

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Publications

Institution(s)

ITMO University, Saint Petersburg, Russian Federation; Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation; Moscow institute of physics and technology (State University), Dolgoprudny, Russian Federation

Funding source(s)

The Government of Russian Federation (Grant 074-U01); JetBrains Research; Russian Scientific Foundation (project #15-14-00066)

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