Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body…
Neptune
Desktop

Neptune

An efficient system for rapidly locating differentially abundant genomic…

An efficient system for rapidly locating differentially abundant genomic content in bacterial populations using an exact k-mer matching strategy, while accommodating k-mer mismatches. Neptune’s…

iVirus
Data

iVirus

Leverages the CyVerse cyberinfrastructure to provide access to viromic tools…

Leverages the CyVerse cyberinfrastructure to provide access to viromic tools and data sets. The iVirus Data Commons contains both raw and processed data from 1866 samples and 73 projects derived from…

IntegromeDB
Data

IntegromeDB

A biological web search engine based on the Semantic Web technologies. The…

A biological web search engine based on the Semantic Web technologies. The IntegromeDB search engine allows scanning data on gene regulation, gene expression, protein-protein interactions, pathways,…

iMicrobe
Data

iMicrobe

Enables discovery and access to microbial datasets consisting of project…

Enables discovery and access to microbial datasets consisting of project information, omics data and assemblies, metadata, and other associated files. Data in the iMicrobe Data Commons can be used in…

IMG/M
Data

IMG/M

Provides support for comparative analysis of microbial community aggregate…

Provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in the context of a comprehensive set of reference genomes from all three domains of life, as well as…

HPMCD
Data

HPMCD Human Pan-Microbe Communities Database

Provides a manually curated, searchable, metagenomic resource to facilitate…

Provides a manually curated, searchable, metagenomic resource to facilitate investigation of human gastrointestinal microbiota. The HPMC database provides species level, standardized phylogenetic…

MetaRef
Data

MetaRef

A resource to comprehensively catalog and characterize clade-specific microbial…

A resource to comprehensively catalog and characterize clade-specific microbial genes. MetaRef organizes currently available draft and finished bacterial and archaeal genomes into quality-controlled…

MetaBioME
Data

MetaBioME Metagenomic BioMining Engine

A web resource to find novel homologs for known commercially useful enzymes…

A web resource to find novel homologs for known commercially useful enzymes (CUEs) in metagenomic datasets and completed bacterial genomes. MetaBioME can be used as an intuitive search engine to…

EBI…
Data

EBI metagenomics

A freely available hub for the analysis and archiving of metagenomic and…

A freely available hub for the analysis and archiving of metagenomic and metatranscriptomic data. EBI metagenomics allows users to easily submit raw nucleotide reads for functional and taxonomic…

MG-RAST
Data

MG-RAST

An open-submission data portal for processing, analyzing, sharing and…

An open-submission data portal for processing, analyzing, sharing and disseminating metagenomic datasets. The system currently hosts over 200,000 datasets and is continuously updated. The volume of…

IMG/VR
Data

IMG/VR

Visualizes and analyses viral sequences. IMG/VR allows users to explore…

Visualizes and analyses viral sequences. IMG/VR allows users to explore associated metadata to decipher biogeographical and habitat distribution patterns of viral species as well as traveling across…

BaMBa
Data

BaMBa Brazilian Marine Biodiversity

Allows integrated views of different data types concerning Brazilian marine…

Allows integrated views of different data types concerning Brazilian marine environment. Essentially, any environmental information can be added to BaMBa. Certified datasets obtained from integrated…

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