MetaPhlAn specifications

Unique identifier:
OMICS_02286
Alternative name:
MetaPhlAn2
Interface:
Command line interface
Input data:
Shotgun metagenome sequencing results.
Output data:
Table of microbial species and their relative abundance for each input.
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Metagenomic Phylogenetic Analysis
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ, SAM
Operating system:
Unix/Linux
License:
MIT License
Version:
2
Requirements:
Python, Bowtie, Numpy, Pandas, BioPython, SciPy, Matplotlib, biom

versioning

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MetaPhlAn distribution

download

MetaPhlAn support

Documentation

Maintainers

  • Nicola Segata <>
  • Duy Tin Truong <>

Additional information

http://huttenhower.sph.harvard.edu/metaphlan

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Publications

Institution(s)

Centre for Integrative Biology, University of Trento, Trento, Italy; Biostatistics Department, Harvard School of Public Health, Boston, MA, USA; The Broad Institute of MIT and Harvard, Cambridge, MA, USA

Funding source(s)

Supported in part by the US National Institutes of Health (grants R01HG005969 and U54DE023798), the US National Science Foundation (grant DBI-1053486), the US Army Research Office (grant W911NF-11-1-0473), Danone Research (grant PLF-5972-GD) the European Union Seventh Framework Programme (Marie Curie grant PCIG13-618833), the Italian Ministry of Education, University and Research (grant FIR RBFR13EWWI), Fondazione Caritro (grant Rif.Int.2013.0239) and Terme di Comano.

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