Shotgun metagenomic sequencing data analysis software tools

Shotgun metagenomic sequencing data analysis software tools Shotgun metagenomic sequencing is a method to comprehensively sample total genomic DNA in all organisms present in a given complex sample. It is used to evaluate bacterial diversity and abundance of microbes in various environments. With the ability to combine many samples in a single sequencing run and obtain high sequence coverage per sample, NGS-based metagenomic sequencing can detect very low abundance members of the microbial community that may be missed or are too expensive to identify using other methods. Shotgun metagenomic sequencing software tools are used for all preprocessing, processing, analysis and visualization steps of sequencing data.

Data preprocessing

Data processing

Binning

Genome variant analysis

Data analysis

Linkage/QTL

Virus genome analysis

Data visualization

Network analysis

Integrative analysis

Workflows

File manipulation

Utilities

Unclassified tools