MetaShot specifications

Unique identifier:
OMICS_17012
Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Requirements:
Numpy, BioPython, Pysam, Psutil, ETE2, Bowtie2, STAR, Krona Graph, FaQCs, Samtools
Name:
Metagenomics Shotgun
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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No versioning.

MetaShot distribution

download

MetaShot support

Documentation

Maintainer

  • Graziano Pesole <>

forum

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Credits

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Publications

Institution(s)

Institute of Biomembranes and Bioenergetics, Consiglio Nazionale delle Ricerche, Bari, Italy; CINECA, Rome, Italy; Department of Oncological Surgery, Gynecologic Oncology Unit, “Regina Elena” National Cancer Institute, Rome, Italy; Department of Cell Biology and Neurosciences, Italian National Institute of Health, Rome, Italy; Lazzaro Spallanzani National Institute for Infectious Diseases, Rome, Italy; Algorithms, Bioinformatics, Complexity and Formal Methods Research Group, Technical University of Catalonia, Barcelona, Spain; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari “A. Moro”, Bari, Italy

Funding source(s)

Supported by MIUR-Italy; CNR Aging and Medicina Personalizzata programs 2012-2014; JPI Project ENPADASI; H2020 projects INMARE, EMBRIC and ELIXIR-EXCELERATE; Spanish Ministry of Economy and Competitiveness and European Regional Development Fund project DPI2015-67082-P (MINECO/FEDER); Grant no. PE-2011-02346905 from the Italian Ministry of Health.

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