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MetaGUN specifications

Information


Unique identifier OMICS_02615
Name MetaGUN
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

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This tool is not available anymore.

Publication for MetaGUN

MetaGUN citations

 (2)
library_books

Gene Prediction in Metagenomic Fragments with Deep Learning

2017
PMCID: 5698827
PMID: 29250541
DOI: 10.1155/2017/4740354

[…] however, the main limitation of such markov chain models is that thousands of parameters are needed in practical use. the machine learning-based methods such as orphelia [, ], mgc [], and metagun [] often formulated the metagenomic fragments with an effective mathematical expression that can truly reflect their intrinsic correlation with the target to be predicted and then designed […]

library_books

An introduction to the analysis of shotgun metagenomic data

2014
PMCID: 4059276
PMID: 24982662
DOI: 10.3389/fpls.2014.00209

[…] gene that has been discovered to date. there are several tools that can be used for de novo gene prediction, including metagene (), glimmer-mg (), metagenemark (), fraggenescan (), orphelia (), and metagun (). in , many of these methods were compared using statistical simulations. the authors found that their performance varied as a function of read properties (e.g., length and sequencing error […]


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MetaGUN institution(s)
State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing, China

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